Expression of 1-1-5.4.6.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.992330.788
27DAP/17DAP1.240850.758
39DAP/27DAP0.940660.608
41DAP/39DAP1.032140.753
42DAP/41DAP1.060920.954
43DAP/42DAP0.993950.937
47DAP/43DAP1.125120.889
52DAP/47DAP0.987410.886
57DAP/52DAP1.022840.993

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.016540.76
17DAP/reference1.036150.201
27DAP/reference1.019840.623
39DAP/reference0.985340.762
41DAP/reference1.050820.365
42DAP/reference0.977830.259
43DAP/reference1.053990.133
47DAP/reference0.982730.366
52DAP/reference0.9560.3
57DAP/reference1.051380.366

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.045521
27DAP/17DAP0.835360.418
39DAP/27DAP1.04610.636
41DAP/39DAP1.095720.748
42DAP/41DAP0.959040.679
43DAP/42DAP0.87250.043
47DAP/43DAP1.13870.69
52DAP/47DAP1.026380.9
57DAP/52DAP1.185880.574
57DAP/7DAP1.897120.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.792740.08
17DAP/reference0.807450.028
27DAP/reference1.171080.073
39DAP/reference0.88320.109
41DAP/reference0.873780.107
42DAP/reference1.009540.828
43DAP/reference0.866990.145
47DAP/reference0.88060.101
52DAP/reference1.137150.159
57DAP/reference0.996560.629

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.892450.306
17DAP/reference0.989710.611
27DAP/reference0.996360.686
39DAP/reference0.939710.202
41DAP/reference0.956850.183
42DAP/reference0.947270.028
43DAP/reference1.285210.268
47DAP/reference0.982420.284
52DAP/reference1.020230.528
57DAP/reference0.984930.649

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.841240.065
17DAP/reference0.884120.234
27DAP/reference0.938560.27
39DAP/reference0.970440.464
41DAP/reference1.135120.222
42DAP/reference1.160280.589
43DAP/reference0.878610.061
47DAP/reference1.002031
52DAP/reference0.976130.718
57DAP/reference0.987660.652

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.000531
26DAP/20DAP1.194790.663
34DAP/26DAP0.842120.783
51DAP/34DAP1.595780.039
52DAP/51DAP0.792771
53DAP/52DAP1.242490.179
55DAP/53DAP0.907360.336
57DAP/55DAP1.3620.407
62DAP/57DAP0.899840.466
68DAP/62DAP1.121130.664
68DAP/14DAP1.064240.504

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.474190.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.864430.426
Mature Green Tomato/Ripe Tomato0.808490.119
Immature Eggplant/Mature Eggplant1.434570.101
Ripe Pepper/Ripe Tomato1.53620.258
Mature Eggplant/Ripe Tomato0.787040.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.123311
1-1-2/M821.064831
12-2/M820.692450.678
12-4/M820.845070.619
1-3/M821.326160.277
2-1-1/M820.886950.92
2-1/M820.99061
2-6/M821.123090.695
3-2/M820.987851
4-1-1/M821.360450.876
4-1/M820.93847
4-3-2/M820.957391
4-3/M821.467081
5-3/M821.175671
6-2/M821.00631
6-3/M821.174261
7-1/M820.999521
7-2/M820.917770.796
9-3-2/M820.964190.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.77703
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.758870.418
IL12-4/WTpooled0.94921
IL1-4/WTpooled1.403231
WT/WTpooled1.032431

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.22380.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.022650.921
DC3000/delta hrp 6h1.225371
DC3000/delta hrp 12h0.954591
DC3000/delta hrp 24h1.05510.62

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.9681
Exp 36h1.167130.489
Exp 60h1.253330.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.972811
Var 0h0.868960.457
Var 12h I row2-row10.923030.467
Var 12h NI row2-row11.158280.649
Var 36h I row2-row11.32870.742
Var 36h NI row2-row11.362681
Var 60h I row2-row10.974771
Var 60h NI row2-row10.778150.304
Time course 0hI-0hNI0.977920.936
Time course 12hI-12hNI1.109020.19
Time course 36hI-36hNI1.164590.722
Time course 60hI-60hNI1.465580.025

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.920130.391
transgenic ySAMdc/azygous control (breaker)1.105970.248
transgenic ySAMdc/azygous control (red)1.20680.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.011120.395

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.700010.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.888331
Manapal/WT (break)0.813260.333
Manapal/WT (red)1.162361