Expression of 1-1-5.4.6.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99233 | 0.788 |
27DAP/17DAP | 1.24085 | 0.758 |
39DAP/27DAP | 0.94066 | 0.608 |
41DAP/39DAP | 1.03214 | 0.753 |
42DAP/41DAP | 1.06092 | 0.954 |
43DAP/42DAP | 0.99395 | 0.937 |
47DAP/43DAP | 1.12512 | 0.889 |
52DAP/47DAP | 0.98741 | 0.886 |
57DAP/52DAP | 1.02284 | 0.993 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01654 | 0.76 |
17DAP/reference | 1.03615 | 0.201 |
27DAP/reference | 1.01984 | 0.623 |
39DAP/reference | 0.98534 | 0.762 |
41DAP/reference | 1.05082 | 0.365 |
42DAP/reference | 0.97783 | 0.259 |
43DAP/reference | 1.05399 | 0.133 |
47DAP/reference | 0.98273 | 0.366 |
52DAP/reference | 0.956 | 0.3 |
57DAP/reference | 1.05138 | 0.366 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04552 | 1 |
27DAP/17DAP | 0.83536 | 0.418 |
39DAP/27DAP | 1.0461 | 0.636 |
41DAP/39DAP | 1.09572 | 0.748 |
42DAP/41DAP | 0.95904 | 0.679 |
43DAP/42DAP | 0.8725 | 0.043 |
47DAP/43DAP | 1.1387 | 0.69 |
52DAP/47DAP | 1.02638 | 0.9 |
57DAP/52DAP | 1.18588 | 0.574 |
57DAP/7DAP | 1.89712 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79274 | 0.08 |
17DAP/reference | 0.80745 | 0.028 |
27DAP/reference | 1.17108 | 0.073 |
39DAP/reference | 0.8832 | 0.109 |
41DAP/reference | 0.87378 | 0.107 |
42DAP/reference | 1.00954 | 0.828 |
43DAP/reference | 0.86699 | 0.145 |
47DAP/reference | 0.8806 | 0.101 |
52DAP/reference | 1.13715 | 0.159 |
57DAP/reference | 0.99656 | 0.629 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89245 | 0.306 |
17DAP/reference | 0.98971 | 0.611 |
27DAP/reference | 0.99636 | 0.686 |
39DAP/reference | 0.93971 | 0.202 |
41DAP/reference | 0.95685 | 0.183 |
42DAP/reference | 0.94727 | 0.028 |
43DAP/reference | 1.28521 | 0.268 |
47DAP/reference | 0.98242 | 0.284 |
52DAP/reference | 1.02023 | 0.528 |
57DAP/reference | 0.98493 | 0.649 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84124 | 0.065 |
17DAP/reference | 0.88412 | 0.234 |
27DAP/reference | 0.93856 | 0.27 |
39DAP/reference | 0.97044 | 0.464 |
41DAP/reference | 1.13512 | 0.222 |
42DAP/reference | 1.16028 | 0.589 |
43DAP/reference | 0.87861 | 0.061 |
47DAP/reference | 1.00203 | 1 |
52DAP/reference | 0.97613 | 0.718 |
57DAP/reference | 0.98766 | 0.652 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00053 | 1 |
26DAP/20DAP | 1.19479 | 0.663 |
34DAP/26DAP | 0.84212 | 0.783 |
51DAP/34DAP | 1.59578 | 0.039 |
52DAP/51DAP | 0.79277 | 1 |
53DAP/52DAP | 1.24249 | 0.179 |
55DAP/53DAP | 0.90736 | 0.336 |
57DAP/55DAP | 1.362 | 0.407 |
62DAP/57DAP | 0.89984 | 0.466 |
68DAP/62DAP | 1.12113 | 0.664 |
68DAP/14DAP | 1.06424 | 0.504 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.47419 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.86443 | 0.426 |
Mature Green Tomato/Ripe Tomato | 0.80849 | 0.119 |
Immature Eggplant/Mature Eggplant | 1.43457 | 0.101 |
Ripe Pepper/Ripe Tomato | 1.5362 | 0.258 |
Mature Eggplant/Ripe Tomato | 0.78704 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.12331 | 1 |
1-1-2/M82 | 1.06483 | 1 |
12-2/M82 | 0.69245 | 0.678 |
12-4/M82 | 0.84507 | 0.619 |
1-3/M82 | 1.32616 | 0.277 |
2-1-1/M82 | 0.88695 | 0.92 |
2-1/M82 | 0.99061 | |
2-6/M82 | 1.12309 | 0.695 |
3-2/M82 | 0.98785 | 1 |
4-1-1/M82 | 1.36045 | 0.876 |
4-1/M82 | 0.93847 | |
4-3-2/M82 | 0.95739 | 1 |
4-3/M82 | 1.46708 | 1 |
5-3/M82 | 1.17567 | 1 |
6-2/M82 | 1.00631 | |
6-3/M82 | 1.17426 | 1 |
7-1/M82 | 0.99952 | 1 |
7-2/M82 | 0.91777 | 0.796 |
9-3-2/M82 | 0.96419 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.77703 | |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.75887 | 0.418 |
IL12-4/WTpooled | 0.9492 | 1 |
IL1-4/WTpooled | 1.40323 | 1 |
WT/WTpooled | 1.03243 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.2238 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02265 | 0.921 |
DC3000/delta hrp 6h | 1.22537 | 1 |
DC3000/delta hrp 12h | 0.95459 | 1 |
DC3000/delta hrp 24h | 1.0551 | 0.62 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.968 | 1 |
Exp 36h | 1.16713 | 0.489 |
Exp 60h | 1.25333 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97281 | 1 |
Var 0h | 0.86896 | 0.457 |
Var 12h I row2-row1 | 0.92303 | 0.467 |
Var 12h NI row2-row1 | 1.15828 | 0.649 |
Var 36h I row2-row1 | 1.3287 | 0.742 |
Var 36h NI row2-row1 | 1.36268 | 1 |
Var 60h I row2-row1 | 0.97477 | 1 |
Var 60h NI row2-row1 | 0.77815 | 0.304 |
Time course 0hI-0hNI | 0.97792 | 0.936 |
Time course 12hI-12hNI | 1.10902 | 0.19 |
Time course 36hI-36hNI | 1.16459 | 0.722 |
Time course 60hI-60hNI | 1.46558 | 0.025 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92013 | 0.391 |
transgenic ySAMdc/azygous control (breaker) | 1.10597 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.2068 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01112 | 0.395 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.70001 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.88833 | 1 |
Manapal/WT (break) | 0.81326 | 0.333 |
Manapal/WT (red) | 1.16236 | 1 |
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