Expression of 1-1-5.4.6.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.078850.893
27DAP/17DAP1.09560.871
39DAP/27DAP0.9740.719
41DAP/39DAP1.240570.264
42DAP/41DAP0.77230.774
43DAP/42DAP0.928790.867
47DAP/43DAP1.021430.859
52DAP/47DAP1.197550.688
57DAP/52DAP1.114391

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.136980.241
17DAP/reference1.016390.764
27DAP/reference1.030330.771
39DAP/reference1.030470.734
41DAP/reference1.035080.587
42DAP/reference0.976760.372
43DAP/reference1.097640.189
47DAP/reference1.184010.419
52DAP/reference0.938490.275
57DAP/reference0.810850.262

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.178690.642
27DAP/17DAP1.034071
39DAP/27DAP1.141560.57
41DAP/39DAP1.154080.817
42DAP/41DAP0.784080.068
43DAP/42DAP1.126960.699
47DAP/43DAP1.000180.971
52DAP/47DAP0.891880.746
57DAP/52DAP1.191030.726
57DAP/7DAP1.022561

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.905950.183
17DAP/reference1.065110.896
27DAP/reference0.949680.325
39DAP/reference1.165590.073
41DAP/reference1.065950.918
42DAP/reference1.039791
43DAP/reference1.073670.364
47DAP/reference1.053120.647
52DAP/reference1.059680.732
57DAP/reference1.032370.851

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.172510.068
17DAP/reference1.163750.147
27DAP/reference0.99890.711
39DAP/reference0.923830.281
41DAP/reference1.009140.683
42DAP/reference0.889010.15
43DAP/reference0.955170.478
47DAP/reference0.94380.168
52DAP/reference0.909240.302
57DAP/reference0.98440.68

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.077480.545
17DAP/reference0.952080.426
27DAP/reference1.034770.967
39DAP/reference0.932620.36
41DAP/reference1.049530.889
42DAP/reference1.045621
43DAP/reference0.924330.305
47DAP/reference0.851640.072
52DAP/reference0.905710.376
57DAP/reference1.017740.92

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.135040.966
26DAP/20DAP1.621660.481
34DAP/26DAP1.038581
51DAP/34DAP0.782730.138
52DAP/51DAP1.073270.742
53DAP/52DAP0.815420.402
55DAP/53DAP0.730170.053
57DAP/55DAP1.145250.745
62DAP/57DAP0.829570.162
68DAP/62DAP0.647770.037
68DAP/14DAP0.802270.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.843980.239

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.813970.317
Immature Eggplant/Mature Eggplant1.09951
Ripe Pepper/Ripe Tomato0.883771
Mature Eggplant/Ripe Tomato1.31840.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.085521
1-1-2/M821.153411
12-2/M821.01905
12-4/M820.991291
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.905971
4-1-1/M82N/AN/A
4-1/M820.761211
4-3-2/M820.889131
4-3/M82N/AN/A
5-3/M821.000931
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.97585
7-2/M821.198361
9-3-2/M820.958051

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.7628
IL2-6/WTpooled0.880161
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.871580.31
IL12-4/WTpooled0.960321
IL1-4/WTpooled0.9893
WT/WTpooled0.992181

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.995451

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.046190.921
DC3000/delta hrp 6h0.682690.697
DC3000/delta hrp 12h0.968481
DC3000/delta hrp 24h1.21660.151

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.0857
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.86611
Exp 36h1.00131
Exp 60h0.975390.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.16460.421
Var 12h I row2-row11.146830.58
Var 12h NI row2-row11.044011
Var 36h I row2-row10.910510.805
Var 36h NI row2-row11.166571
Var 60h I row2-row11.05230.271
Var 60h NI row2-row10.905390.977
Time course 0hI-0hNI1.111180.603
Time course 12hI-12hNI1.041970.788
Time course 36hI-36hNI1.046680.19
Time course 60hI-60hNI1.04750.495

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.063050.541
transgenic ySAMdc/azygous control (breaker)1.201921
transgenic ySAMdc/azygous control (red)1.05840.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.978880.609

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.020311

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.849721
Manapal/WT (break)0.94011
Manapal/WT (red)1.389120.222