Expression of 1-1-5.4.6.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07885 | 0.893 |
27DAP/17DAP | 1.0956 | 0.871 |
39DAP/27DAP | 0.974 | 0.719 |
41DAP/39DAP | 1.24057 | 0.264 |
42DAP/41DAP | 0.7723 | 0.774 |
43DAP/42DAP | 0.92879 | 0.867 |
47DAP/43DAP | 1.02143 | 0.859 |
52DAP/47DAP | 1.19755 | 0.688 |
57DAP/52DAP | 1.11439 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13698 | 0.241 |
17DAP/reference | 1.01639 | 0.764 |
27DAP/reference | 1.03033 | 0.771 |
39DAP/reference | 1.03047 | 0.734 |
41DAP/reference | 1.03508 | 0.587 |
42DAP/reference | 0.97676 | 0.372 |
43DAP/reference | 1.09764 | 0.189 |
47DAP/reference | 1.18401 | 0.419 |
52DAP/reference | 0.93849 | 0.275 |
57DAP/reference | 0.81085 | 0.262 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17869 | 0.642 |
27DAP/17DAP | 1.03407 | 1 |
39DAP/27DAP | 1.14156 | 0.57 |
41DAP/39DAP | 1.15408 | 0.817 |
42DAP/41DAP | 0.78408 | 0.068 |
43DAP/42DAP | 1.12696 | 0.699 |
47DAP/43DAP | 1.00018 | 0.971 |
52DAP/47DAP | 0.89188 | 0.746 |
57DAP/52DAP | 1.19103 | 0.726 |
57DAP/7DAP | 1.02256 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90595 | 0.183 |
17DAP/reference | 1.06511 | 0.896 |
27DAP/reference | 0.94968 | 0.325 |
39DAP/reference | 1.16559 | 0.073 |
41DAP/reference | 1.06595 | 0.918 |
42DAP/reference | 1.03979 | 1 |
43DAP/reference | 1.07367 | 0.364 |
47DAP/reference | 1.05312 | 0.647 |
52DAP/reference | 1.05968 | 0.732 |
57DAP/reference | 1.03237 | 0.851 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17251 | 0.068 |
17DAP/reference | 1.16375 | 0.147 |
27DAP/reference | 0.9989 | 0.711 |
39DAP/reference | 0.92383 | 0.281 |
41DAP/reference | 1.00914 | 0.683 |
42DAP/reference | 0.88901 | 0.15 |
43DAP/reference | 0.95517 | 0.478 |
47DAP/reference | 0.9438 | 0.168 |
52DAP/reference | 0.90924 | 0.302 |
57DAP/reference | 0.9844 | 0.68 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07748 | 0.545 |
17DAP/reference | 0.95208 | 0.426 |
27DAP/reference | 1.03477 | 0.967 |
39DAP/reference | 0.93262 | 0.36 |
41DAP/reference | 1.04953 | 0.889 |
42DAP/reference | 1.04562 | 1 |
43DAP/reference | 0.92433 | 0.305 |
47DAP/reference | 0.85164 | 0.072 |
52DAP/reference | 0.90571 | 0.376 |
57DAP/reference | 1.01774 | 0.92 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.13504 | 0.966 |
26DAP/20DAP | 1.62166 | 0.481 |
34DAP/26DAP | 1.03858 | 1 |
51DAP/34DAP | 0.78273 | 0.138 |
52DAP/51DAP | 1.07327 | 0.742 |
53DAP/52DAP | 0.81542 | 0.402 |
55DAP/53DAP | 0.73017 | 0.053 |
57DAP/55DAP | 1.14525 | 0.745 |
62DAP/57DAP | 0.82957 | 0.162 |
68DAP/62DAP | 0.64777 | 0.037 |
68DAP/14DAP | 0.80227 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.84398 | 0.239 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.81397 | 0.317 |
Immature Eggplant/Mature Eggplant | 1.09951 | |
Ripe Pepper/Ripe Tomato | 0.88377 | 1 |
Mature Eggplant/Ripe Tomato | 1.3184 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.08552 | 1 |
1-1-2/M82 | 1.15341 | 1 |
12-2/M82 | 1.01905 | |
12-4/M82 | 0.99129 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.90597 | 1 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.76121 | 1 |
4-3-2/M82 | 0.88913 | 1 |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.00093 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.97585 | |
7-2/M82 | 1.19836 | 1 |
9-3-2/M82 | 0.95805 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.7628 | |
IL2-6/WTpooled | 0.88016 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.87158 | 0.31 |
IL12-4/WTpooled | 0.96032 | 1 |
IL1-4/WTpooled | 0.9893 | |
WT/WTpooled | 0.99218 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.99545 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04619 | 0.921 |
DC3000/delta hrp 6h | 0.68269 | 0.697 |
DC3000/delta hrp 12h | 0.96848 | 1 |
DC3000/delta hrp 24h | 1.2166 | 0.151 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.0857 | |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.8661 | 1 |
Exp 36h | 1.0013 | 1 |
Exp 60h | 0.97539 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.1646 | 0.421 |
Var 12h I row2-row1 | 1.14683 | 0.58 |
Var 12h NI row2-row1 | 1.04401 | 1 |
Var 36h I row2-row1 | 0.91051 | 0.805 |
Var 36h NI row2-row1 | 1.16657 | 1 |
Var 60h I row2-row1 | 1.0523 | 0.271 |
Var 60h NI row2-row1 | 0.90539 | 0.977 |
Time course 0hI-0hNI | 1.11118 | 0.603 |
Time course 12hI-12hNI | 1.04197 | 0.788 |
Time course 36hI-36hNI | 1.04668 | 0.19 |
Time course 60hI-60hNI | 1.0475 | 0.495 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.06305 | 0.541 |
transgenic ySAMdc/azygous control (breaker) | 1.20192 | 1 |
transgenic ySAMdc/azygous control (red) | 1.0584 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97888 | 0.609 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.02031 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.84972 | 1 |
Manapal/WT (break) | 0.9401 | 1 |
Manapal/WT (red) | 1.38912 | 0.222 |
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