Expression of 1-1-5.4.7.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.212590.67
27DAP/17DAP0.508450.027
39DAP/27DAP0.78080.346
41DAP/39DAP0.610010.045
42DAP/41DAP0.705940.397
43DAP/42DAP1.122320.867
47DAP/43DAP0.739850.251
52DAP/47DAP0.89790.695
57DAP/52DAP1.005590.988

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.749860.047
17DAP/reference0.671550.008
27DAP/reference0.662970.012
39DAP/reference0.580540.012
41DAP/reference0.497350.008
42DAP/reference0.474990.001
43DAP/reference0.486160.012
47DAP/reference0.349960.001
52DAP/reference0.353220.012
57DAP/reference0.432070.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.485670.047
27DAP/17DAP0.703450.144
39DAP/27DAP0.391740.028
41DAP/39DAP1.20990.041
42DAP/41DAP0.883450.305
43DAP/42DAP0.763090.027
47DAP/43DAP1.025380.973
52DAP/47DAP0.85220.251
57DAP/52DAP0.833750.371
57DAP/7DAP0.444571

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.135630.305
17DAP/reference0.861170.028
27DAP/reference0.57360.01
39DAP/reference0.475320.011
41DAP/reference0.415740.011
42DAP/reference0.375130.01
43DAP/reference0.284680.009
47DAP/reference0.331670.026
52DAP/reference0.414820.01
57DAP/reference0.41830.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.541310.008
17DAP/reference0.638340.042
27DAP/reference0.605150.019
39DAP/reference0.387060.007
41DAP/reference0.446870.005
42DAP/reference0.451450.011
43DAP/reference0.290760.002
47DAP/reference0.455370.009
52DAP/reference0.350520.003
57DAP/reference0.267620.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.132220.015
17DAP/reference1.785140.146
27DAP/reference1.371630.033
39DAP/reference1.096220.65
41DAP/reference0.734840.023
42DAP/reference0.497520.016
43DAP/reference0.510110.016
47DAP/reference0.335380.004
52DAP/reference0.426720.047
57DAP/reference0.874660.203

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.893461
26DAP/20DAP1.017021
34DAP/26DAP0.881910.561
51DAP/34DAP0.465870.049
52DAP/51DAP0.928821
53DAP/52DAP0.92510.776
55DAP/53DAP0.746650.021
57DAP/55DAP0.976140.854
62DAP/57DAP1.277860.622
68DAP/62DAP1.409950.135
68DAP/14DAP0.397540.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.745420.102

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.766480.058
Mature Green Tomato/Ripe Tomato4.356020.015
Immature Eggplant/Mature Eggplant0.530.062
Ripe Pepper/Ripe Tomato2.762651
Mature Eggplant/Ripe Tomato5.20160.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.76638
1-1-2/M820.92747
12-2/M820.47636
12-4/M821.10089
1-3/M82N/AN/A
2-1-1/M821.05798
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.18752
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.78869
4-3/M821.208561
5-3/M821.362170.572
6-2/M821.38662
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M820.56994
9-3-2/M821.19097

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.73099
IL2-6/WTpooled1.230610.788
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.081761
IL12-4/WTpooled1.05650.891
IL1-4/WTpooled0.897260.834
WT/WTpooled1.058331

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.999161

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.941221
DC3000/delta hrp 6h0.894220.95
DC3000/delta hrp 12h0.946041
DC3000/delta hrp 24h0.892160.534

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.740810.183
DC3000 delta B/DC3000 delta AB0.567730.021

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.083781
Exp 36h0.9220.661
Exp 60h0.894820.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.983441
Var 0h0.974941
Var 12h I row2-row10.978920.418
Var 12h NI row2-row10.980810.906
Var 36h I row2-row10.962561
Var 36h NI row2-row10.950590.549
Var 60h I row2-row11.25210.562
Var 60h NI row2-row11.002031
Time course 0hI-0hNI1.024410.662
Time course 12hI-12hNI1.007390.861
Time course 36hI-36hNI0.982280.46
Time course 60hI-60hNI0.624530.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.027870.863
transgenic ySAMdc/azygous control (breaker)2.041450.166
transgenic ySAMdc/azygous control (red)1.12130.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.548920.083

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.687370.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)4.430180.09
Manapal/WT (break)2.59610.123
Manapal/WT (red)1.127031