Expression of 1-1-5.4.7.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.21259 | 0.67 |
27DAP/17DAP | 0.50845 | 0.027 |
39DAP/27DAP | 0.7808 | 0.346 |
41DAP/39DAP | 0.61001 | 0.045 |
42DAP/41DAP | 0.70594 | 0.397 |
43DAP/42DAP | 1.12232 | 0.867 |
47DAP/43DAP | 0.73985 | 0.251 |
52DAP/47DAP | 0.8979 | 0.695 |
57DAP/52DAP | 1.00559 | 0.988 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.74986 | 0.047 |
17DAP/reference | 0.67155 | 0.008 |
27DAP/reference | 0.66297 | 0.012 |
39DAP/reference | 0.58054 | 0.012 |
41DAP/reference | 0.49735 | 0.008 |
42DAP/reference | 0.47499 | 0.001 |
43DAP/reference | 0.48616 | 0.012 |
47DAP/reference | 0.34996 | 0.001 |
52DAP/reference | 0.35322 | 0.012 |
57DAP/reference | 0.43207 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.48567 | 0.047 |
27DAP/17DAP | 0.70345 | 0.144 |
39DAP/27DAP | 0.39174 | 0.028 |
41DAP/39DAP | 1.2099 | 0.041 |
42DAP/41DAP | 0.88345 | 0.305 |
43DAP/42DAP | 0.76309 | 0.027 |
47DAP/43DAP | 1.02538 | 0.973 |
52DAP/47DAP | 0.8522 | 0.251 |
57DAP/52DAP | 0.83375 | 0.371 |
57DAP/7DAP | 0.44457 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13563 | 0.305 |
17DAP/reference | 0.86117 | 0.028 |
27DAP/reference | 0.5736 | 0.01 |
39DAP/reference | 0.47532 | 0.011 |
41DAP/reference | 0.41574 | 0.011 |
42DAP/reference | 0.37513 | 0.01 |
43DAP/reference | 0.28468 | 0.009 |
47DAP/reference | 0.33167 | 0.026 |
52DAP/reference | 0.41482 | 0.01 |
57DAP/reference | 0.4183 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.54131 | 0.008 |
17DAP/reference | 0.63834 | 0.042 |
27DAP/reference | 0.60515 | 0.019 |
39DAP/reference | 0.38706 | 0.007 |
41DAP/reference | 0.44687 | 0.005 |
42DAP/reference | 0.45145 | 0.011 |
43DAP/reference | 0.29076 | 0.002 |
47DAP/reference | 0.45537 | 0.009 |
52DAP/reference | 0.35052 | 0.003 |
57DAP/reference | 0.26762 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.13222 | 0.015 |
17DAP/reference | 1.78514 | 0.146 |
27DAP/reference | 1.37163 | 0.033 |
39DAP/reference | 1.09622 | 0.65 |
41DAP/reference | 0.73484 | 0.023 |
42DAP/reference | 0.49752 | 0.016 |
43DAP/reference | 0.51011 | 0.016 |
47DAP/reference | 0.33538 | 0.004 |
52DAP/reference | 0.42672 | 0.047 |
57DAP/reference | 0.87466 | 0.203 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.89346 | 1 |
26DAP/20DAP | 1.01702 | 1 |
34DAP/26DAP | 0.88191 | 0.561 |
51DAP/34DAP | 0.46587 | 0.049 |
52DAP/51DAP | 0.92882 | 1 |
53DAP/52DAP | 0.9251 | 0.776 |
55DAP/53DAP | 0.74665 | 0.021 |
57DAP/55DAP | 0.97614 | 0.854 |
62DAP/57DAP | 1.27786 | 0.622 |
68DAP/62DAP | 1.40995 | 0.135 |
68DAP/14DAP | 0.39754 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.74542 | 0.102 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.76648 | 0.058 |
Mature Green Tomato/Ripe Tomato | 4.35602 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.53 | 0.062 |
Ripe Pepper/Ripe Tomato | 2.76265 | 1 |
Mature Eggplant/Ripe Tomato | 5.2016 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.76638 | |
1-1-2/M82 | 0.92747 | |
12-2/M82 | 0.47636 | |
12-4/M82 | 1.10089 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.05798 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.18752 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.78869 | |
4-3/M82 | 1.20856 | 1 |
5-3/M82 | 1.36217 | 0.572 |
6-2/M82 | 1.38662 | |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.56994 | |
9-3-2/M82 | 1.19097 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.73099 | |
IL2-6/WTpooled | 1.23061 | 0.788 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.08176 | 1 |
IL12-4/WTpooled | 1.0565 | 0.891 |
IL1-4/WTpooled | 0.89726 | 0.834 |
WT/WTpooled | 1.05833 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.99916 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94122 | 1 |
DC3000/delta hrp 6h | 0.89422 | 0.95 |
DC3000/delta hrp 12h | 0.94604 | 1 |
DC3000/delta hrp 24h | 0.89216 | 0.534 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.74081 | 0.183 |
DC3000 delta B/DC3000 delta AB | 0.56773 | 0.021 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.08378 | 1 |
Exp 36h | 0.922 | 0.661 |
Exp 60h | 0.89482 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98344 | 1 |
Var 0h | 0.97494 | 1 |
Var 12h I row2-row1 | 0.97892 | 0.418 |
Var 12h NI row2-row1 | 0.98081 | 0.906 |
Var 36h I row2-row1 | 0.96256 | 1 |
Var 36h NI row2-row1 | 0.95059 | 0.549 |
Var 60h I row2-row1 | 1.2521 | 0.562 |
Var 60h NI row2-row1 | 1.00203 | 1 |
Time course 0hI-0hNI | 1.02441 | 0.662 |
Time course 12hI-12hNI | 1.00739 | 0.861 |
Time course 36hI-36hNI | 0.98228 | 0.46 |
Time course 60hI-60hNI | 0.62453 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02787 | 0.863 |
transgenic ySAMdc/azygous control (breaker) | 2.04145 | 0.166 |
transgenic ySAMdc/azygous control (red) | 1.1213 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.54892 | 0.083 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.68737 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 4.43018 | 0.09 |
Manapal/WT (break) | 2.5961 | 0.123 |
Manapal/WT (red) | 1.12703 | 1 |
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