Expression of 1-1-5.4.7.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06784 | 0.932 |
27DAP/17DAP | 1.0378 | 0.902 |
39DAP/27DAP | 1.03991 | 0.899 |
41DAP/39DAP | 1.0337 | 0.96 |
42DAP/41DAP | 0.91401 | 0.774 |
43DAP/42DAP | 1.02569 | 1 |
47DAP/43DAP | 1.09891 | 0.633 |
52DAP/47DAP | 0.85754 | 0.605 |
57DAP/52DAP | 0.95799 | 0.949 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01777 | 1 |
17DAP/reference | 0.98316 | 0.597 |
27DAP/reference | 0.96037 | 0.275 |
39DAP/reference | 1.01683 | 0.393 |
41DAP/reference | 1.0021 | 1 |
42DAP/reference | 1.03452 | 0.252 |
43DAP/reference | 1.01684 | 0.812 |
47DAP/reference | 1.0093 | 1 |
52DAP/reference | 0.9679 | 0.405 |
57DAP/reference | 0.9714 | 0.395 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.8819 | 0.289 |
27DAP/17DAP | 1.07007 | 0.976 |
39DAP/27DAP | 0.9339 | 0.556 |
41DAP/39DAP | 1.00567 | 1 |
42DAP/41DAP | 0.91105 | 0.436 |
43DAP/42DAP | 1.17005 | 0.664 |
47DAP/43DAP | 0.93272 | 0.525 |
52DAP/47DAP | 1.07206 | 0.799 |
57DAP/52DAP | 1.01471 | 0.984 |
57DAP/7DAP | 0.91174 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08267 | 0.664 |
17DAP/reference | 1.1236 | 0.822 |
27DAP/reference | 1.34437 | 0.107 |
39DAP/reference | 0.91125 | 0.012 |
41DAP/reference | 1.22993 | 0.023 |
42DAP/reference | 0.96491 | 0.415 |
43DAP/reference | 1.0372 | 0.873 |
47DAP/reference | 0.9905 | 1 |
52DAP/reference | 1.30845 | 0.017 |
57DAP/reference | 1.14338 | 0.1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06418 | 0.687 |
17DAP/reference | 1.17592 | 0.01 |
27DAP/reference | 1.19189 | 0.041 |
39DAP/reference | 1.14107 | 0.025 |
41DAP/reference | 1.15453 | 0.277 |
42DAP/reference | 1.08187 | 0.369 |
43DAP/reference | 1.12759 | 0.761 |
47DAP/reference | 1.03614 | 0.527 |
52DAP/reference | 1.12741 | 0.03 |
57DAP/reference | 1.08661 | 0.075 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.38137 | 0.134 |
17DAP/reference | 1.07416 | 0.675 |
27DAP/reference | 1.10756 | 0.51 |
39DAP/reference | 1.06814 | 0.365 |
41DAP/reference | 1.21434 | 0.125 |
42DAP/reference | 1.15693 | 0.347 |
43DAP/reference | 1.03889 | 0.572 |
47DAP/reference | 0.96569 | 0.174 |
52DAP/reference | 1.0565 | 0.759 |
57DAP/reference | 1.08498 | 0.401 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.9478 | 1 |
26DAP/20DAP | 1.04044 | 1 |
34DAP/26DAP | 1.18876 | 0.542 |
51DAP/34DAP | 1.08587 | 0.524 |
52DAP/51DAP | 1.40331 | 0.08 |
53DAP/52DAP | 0.95993 | 0.835 |
55DAP/53DAP | 1.08824 | 0.275 |
57DAP/55DAP | 0.9046 | 0.644 |
62DAP/57DAP | 1.00082 | 1 |
68DAP/62DAP | 0.95433 | 0.769 |
68DAP/14DAP | 1.03222 | 0.636 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.98938 | 0.696 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.2719 | 0.176 |
Mature Green Tomato/Ripe Tomato | 0.98773 | 0.774 |
Immature Eggplant/Mature Eggplant | 0.36505 | 0.062 |
Ripe Pepper/Ripe Tomato | 1.0944 | 1 |
Mature Eggplant/Ripe Tomato | 5.72556 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.01004 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.20829 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.84363 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.97017 | |
3-2/M82 | 1.00545 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.22706 | 1 |
4-3-2/M82 | 1.06013 | |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.9827 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.8456 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.14035 | 0.277 |
IL2-6/WTpooled | 1.41297 | 0.659 |
IL7-5/WTpooled | 1.06264 | 1 |
IL7-3/WTpooled | 0.91149 | 1 |
IL12-4/WTpooled | 1.08411 | 0.785 |
IL1-4/WTpooled | 0.90923 | 0.834 |
WT/WTpooled | 1.00872 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.3224 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01121 | 1 |
DC3000/delta hrp 6h | 1.10119 | 1 |
DC3000/delta hrp 12h | 1.01437 | 1 |
DC3000/delta hrp 24h | 0.52255 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.07479 | 0.29 |
DC3000 delta B/DC3000 delta AB | 1.05234 | 0.55 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.00699 | 1 |
Exp 36h | 0.76673 | 0.589 |
Exp 60h | 0.69572 | 0.29 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.93999 | 1 |
Var 0h | 1.06325 | 1 |
Var 12h I row2-row1 | 0.9337 | 0.338 |
Var 12h NI row2-row1 | 0.98361 | 0.713 |
Var 36h I row2-row1 | 0.95733 | 1 |
Var 36h NI row2-row1 | 1.07914 | 1 |
Var 60h I row2-row1 | 1.05574 | 0.562 |
Var 60h NI row2-row1 | 1.01384 | 1 |
Time course 0hI-0hNI | 0.97859 | 0.906 |
Time course 12hI-12hNI | 0.99913 | 1 |
Time course 36hI-36hNI | 0.9868 | 0.504 |
Time course 60hI-60hNI | 0.62575 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.71322 | 0.227 |
transgenic ySAMdc/azygous control (breaker) | 1.17534 | 1 |
transgenic ySAMdc/azygous control (red) | 1.28576 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95686 | 0.093 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.22556 | 0.231 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.26191 | 0.307 |
Manapal/WT (break) | 0.63001 | 0.299 |
Manapal/WT (red) | 1.18257 | 0.413 |
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