Expression of 1-1-5.4.9.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07798 | 0.798 |
27DAP/17DAP | 1.69278 | 0.362 |
39DAP/27DAP | 0.89225 | 0.544 |
41DAP/39DAP | 1.0025 | 0.954 |
42DAP/41DAP | 0.83638 | 0.774 |
43DAP/42DAP | 0.82384 | 0.589 |
47DAP/43DAP | 1.2538 | 0.474 |
52DAP/47DAP | 0.89527 | 0.681 |
57DAP/52DAP | 0.98081 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03807 | 0.994 |
17DAP/reference | 1.08651 | 0.035 |
27DAP/reference | 1.03403 | 0.794 |
39DAP/reference | 1.06989 | 0.386 |
41DAP/reference | 1.15167 | 0.013 |
42DAP/reference | 0.96076 | 0.25 |
43DAP/reference | 1.04886 | 0.678 |
47DAP/reference | 0.98172 | 0.445 |
52DAP/reference | 0.72377 | 0.017 |
57DAP/reference | 0.72685 | 0.014 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.38803 | 0.312 |
27DAP/17DAP | 1.1333 | 0.754 |
39DAP/27DAP | 0.98369 | 0.925 |
41DAP/39DAP | 0.87481 | 0.186 |
42DAP/41DAP | 1.21905 | 0.075 |
43DAP/42DAP | 1.03064 | 0.746 |
47DAP/43DAP | 0.86867 | 0.04 |
52DAP/47DAP | 0.99878 | 0.962 |
57DAP/52DAP | 0.94802 | 0.637 |
57DAP/7DAP | 2.21199 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96311 | 0.495 |
17DAP/reference | 1.04482 | 0.896 |
27DAP/reference | 1.09656 | 0.131 |
39DAP/reference | 0.99965 | 0.64 |
41DAP/reference | 0.92427 | 0.298 |
42DAP/reference | 0.81065 | 0.086 |
43DAP/reference | 0.88853 | 0.183 |
47DAP/reference | 1.09157 | 0.353 |
52DAP/reference | 0.84531 | 0.137 |
57DAP/reference | 1.06805 | 0.308 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20988 | 0.131 |
17DAP/reference | 1.00283 | 0.747 |
27DAP/reference | 1.00299 | 0.765 |
39DAP/reference | 0.88629 | 0.156 |
41DAP/reference | 0.81293 | 0.085 |
42DAP/reference | 0.98959 | 0.594 |
43DAP/reference | 1.54009 | 0.023 |
47DAP/reference | 0.98941 | 0.625 |
52DAP/reference | 0.90502 | 0.187 |
57DAP/reference | 1.36821 | 0.094 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86203 | 0.074 |
17DAP/reference | 1.20443 | 0.09 |
27DAP/reference | 1.12878 | 0.137 |
39DAP/reference | 1.15332 | 0.084 |
41DAP/reference | 1.0973 | 0.502 |
42DAP/reference | 0.93801 | 0.445 |
43DAP/reference | 0.88251 | 0.143 |
47DAP/reference | 1.08314 | 0.73 |
52DAP/reference | 2.50223 | 0.295 |
57DAP/reference | 0.80699 | 0.087 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99605 | 1 |
26DAP/20DAP | 1.21577 | 0.642 |
34DAP/26DAP | 0.85653 | 0.666 |
51DAP/34DAP | 0.94208 | 0.698 |
52DAP/51DAP | 0.99388 | 1 |
53DAP/52DAP | 1.10957 | 0.565 |
55DAP/53DAP | 1.20424 | 0.252 |
57DAP/55DAP | 0.94001 | 0.677 |
62DAP/57DAP | 0.99375 | 0.994 |
68DAP/62DAP | 0.78355 | 0.177 |
68DAP/14DAP | 0.73987 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.35307 | 0.151 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.29965 | 0.632 |
Immature Eggplant/Mature Eggplant | 1.24044 | 0.054 |
Ripe Pepper/Ripe Tomato | 0.55643 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.79349 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.13159 | 0.742 |
1-1-2/M82 | 1.08359 | 1 |
12-2/M82 | 1.09822 | 0.61 |
12-4/M82 | 1.21928 | 1 |
1-3/M82 | 1.108 | 1 |
2-1-1/M82 | 0.86058 | 0.683 |
2-1/M82 | 1.35527 | |
2-6/M82 | 0.9803 | 1 |
3-2/M82 | 1.01429 | 1 |
4-1-1/M82 | 0.70735 | 0.833 |
4-1/M82 | 1.63291 | |
4-3-2/M82 | 0.74294 | 0.698 |
4-3/M82 | 1.0825 | 1 |
5-3/M82 | 1.06537 | 0.467 |
6-2/M82 | 0.77178 | |
6-3/M82 | 0.93112 | 1 |
7-1/M82 | 1.025 | 1 |
7-2/M82 | 0.7637 | 0.375 |
9-3-2/M82 | 1.05207 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.98487 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.04394 | 1 |
IL12-4/WTpooled | 1.0309 | 1 |
IL1-4/WTpooled | 0.88624 | |
WT/WTpooled | 0.97722 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.92227 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05544 | 0.921 |
DC3000/delta hrp 6h | 0.93611 | 0.95 |
DC3000/delta hrp 12h | 1.05437 | 1 |
DC3000/delta hrp 24h | 0.97359 | 0.851 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.77164 | 0.042 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96613 | 1 |
Exp 36h | 1.02788 | 1 |
Exp 60h | 0.84463 | 0.522 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03086 | 1 |
Var 0h | 0.97813 | 1 |
Var 12h I row2-row1 | 1.46337 | 0.348 |
Var 12h NI row2-row1 | 1.03913 | 1 |
Var 36h I row2-row1 | 1.07511 | 1 |
Var 36h NI row2-row1 | 1.30735 | 0.482 |
Var 60h I row2-row1 | 0.95444 | 0.285 |
Var 60h NI row2-row1 | 1.25486 | 0.793 |
Time course 0hI-0hNI | 1.19558 | 0.262 |
Time course 12hI-12hNI | 0.90186 | 0.231 |
Time course 36hI-36hNI | 0.64529 | 0.023 |
Time course 60hI-60hNI | 0.55007 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.05444 | 0.212 |
transgenic ySAMdc/azygous control (breaker) | 0.68804 | 0.131 |
transgenic ySAMdc/azygous control (red) | 0.92413 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04073 | 0.135 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.86556 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.76021 | 0.172 |
Manapal/WT (break) | 0.82582 | 1 |
Manapal/WT (red) | 0.51397 | 0.181 |
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