Expression of 1-1-5.4.9.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.077980.798
27DAP/17DAP1.692780.362
39DAP/27DAP0.892250.544
41DAP/39DAP1.00250.954
42DAP/41DAP0.836380.774
43DAP/42DAP0.823840.589
47DAP/43DAP1.25380.474
52DAP/47DAP0.895270.681
57DAP/52DAP0.980810.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.038070.994
17DAP/reference1.086510.035
27DAP/reference1.034030.794
39DAP/reference1.069890.386
41DAP/reference1.151670.013
42DAP/reference0.960760.25
43DAP/reference1.048860.678
47DAP/reference0.981720.445
52DAP/reference0.723770.017
57DAP/reference0.726850.014

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.388030.312
27DAP/17DAP1.13330.754
39DAP/27DAP0.983690.925
41DAP/39DAP0.874810.186
42DAP/41DAP1.219050.075
43DAP/42DAP1.030640.746
47DAP/43DAP0.868670.04
52DAP/47DAP0.998780.962
57DAP/52DAP0.948020.637
57DAP/7DAP2.211991

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.963110.495
17DAP/reference1.044820.896
27DAP/reference1.096560.131
39DAP/reference0.999650.64
41DAP/reference0.924270.298
42DAP/reference0.810650.086
43DAP/reference0.888530.183
47DAP/reference1.091570.353
52DAP/reference0.845310.137
57DAP/reference1.068050.308

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.209880.131
17DAP/reference1.002830.747
27DAP/reference1.002990.765
39DAP/reference0.886290.156
41DAP/reference0.812930.085
42DAP/reference0.989590.594
43DAP/reference1.540090.023
47DAP/reference0.989410.625
52DAP/reference0.905020.187
57DAP/reference1.368210.094

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.862030.074
17DAP/reference1.204430.09
27DAP/reference1.128780.137
39DAP/reference1.153320.084
41DAP/reference1.09730.502
42DAP/reference0.938010.445
43DAP/reference0.882510.143
47DAP/reference1.083140.73
52DAP/reference2.502230.295
57DAP/reference0.806990.087

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.996051
26DAP/20DAP1.215770.642
34DAP/26DAP0.856530.666
51DAP/34DAP0.942080.698
52DAP/51DAP0.993881
53DAP/52DAP1.109570.565
55DAP/53DAP1.204240.252
57DAP/55DAP0.940010.677
62DAP/57DAP0.993750.994
68DAP/62DAP0.783550.177
68DAP/14DAP0.739870.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.353070.151

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.299650.632
Immature Eggplant/Mature Eggplant1.240440.054
Ripe Pepper/Ripe Tomato0.556430.224
Mature Eggplant/Ripe Tomato0.793490.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.131590.742
1-1-2/M821.083591
12-2/M821.098220.61
12-4/M821.219281
1-3/M821.1081
2-1-1/M820.860580.683
2-1/M821.35527
2-6/M820.98031
3-2/M821.014291
4-1-1/M820.707350.833
4-1/M821.63291
4-3-2/M820.742940.698
4-3/M821.08251
5-3/M821.065370.467
6-2/M820.77178
6-3/M820.931121
7-1/M821.0251
7-2/M820.76370.375
9-3-2/M821.052071

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.984871
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.043941
IL12-4/WTpooled1.03091
IL1-4/WTpooled0.88624
WT/WTpooled0.977221

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.922270.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.055440.921
DC3000/delta hrp 6h0.936110.95
DC3000/delta hrp 12h1.054371
DC3000/delta hrp 24h0.973590.851

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.771640.042

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.966131
Exp 36h1.027881
Exp 60h0.844630.522

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.030861
Var 0h0.978131
Var 12h I row2-row11.463370.348
Var 12h NI row2-row11.039131
Var 36h I row2-row11.075111
Var 36h NI row2-row11.307350.482
Var 60h I row2-row10.954440.285
Var 60h NI row2-row11.254860.793
Time course 0hI-0hNI1.195580.262
Time course 12hI-12hNI0.901860.231
Time course 36hI-36hNI0.645290.023
Time course 60hI-60hNI0.550070.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.054440.212
transgenic ySAMdc/azygous control (breaker)0.688040.131
transgenic ySAMdc/azygous control (red)0.924131

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.040730.135

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.865560.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.760210.172
Manapal/WT (break)0.825821
Manapal/WT (red)0.513970.181