Expression of 1-1-6.1.1.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.068510.912
27DAP/17DAP0.523940.031
39DAP/27DAP1.113060.84
41DAP/39DAP0.635660.055
42DAP/41DAP1.137250.898
43DAP/42DAP0.924150.759
47DAP/43DAP0.87370.58
52DAP/47DAP1.517780.268
57DAP/52DAP0.890380.853

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.742080.067
17DAP/reference0.563160.009
27DAP/reference0.554830.012
39DAP/reference0.605030.011
41DAP/reference0.50440.009
42DAP/reference0.849980.048
43DAP/reference0.736610.073
47DAP/reference0.744560.006
52DAP/reference0.640420.028
57DAP/reference0.868710.045

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.443750.041
27DAP/17DAP0.68420.101
39DAP/27DAP0.575810.029
41DAP/39DAP1.093780.753
42DAP/41DAP0.921410.382
43DAP/42DAP0.992980.96
47DAP/43DAP1.123360.383
52DAP/47DAP0.758080.042
57DAP/52DAP1.320420.228
57DAP/7DAP0.842361

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.15230.286
17DAP/reference0.843090.02
27DAP/reference0.702850.01
39DAP/reference0.880970.043
41DAP/reference0.699370.013
42DAP/reference0.783570.011
43DAP/reference0.944780.279
47DAP/reference0.75380.04
52DAP/reference1.041390.781
57DAP/reference0.979490.477

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.545970.01
17DAP/reference0.443480.007
27DAP/reference0.668680.054
39DAP/reference0.513340.021
41DAP/reference0.657180.024
42DAP/reference0.828040.108
43DAP/reference0.355860.002
47DAP/reference0.837210.047
52DAP/reference0.713910.131
57DAP/reference0.819760.107

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.175180.018
17DAP/reference1.621490.145
27DAP/reference1.272960.051
39DAP/reference0.989250.693
41DAP/reference0.828270.096
42DAP/reference0.587330.016
43DAP/reference0.666480.018
47DAP/reference0.522770.004
52DAP/reference0.764240.164
57DAP/reference1.186830.274

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.280310.966
26DAP/20DAP1.151810.826
34DAP/26DAP0.863620.561
51DAP/34DAP0.505870.049
52DAP/51DAP0.902841
53DAP/52DAP0.912740.612
55DAP/53DAP0.786620.21
57DAP/55DAP1.331960.34
62DAP/57DAP1.707870.002
68DAP/62DAP0.894180.722
68DAP/14DAP1.009111

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.849580.186

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.278120.058
Mature Green Tomato/Ripe Tomato0.943920.66
Immature Eggplant/Mature Eggplant1.526290.05
Ripe Pepper/Ripe Tomato0.956391
Mature Eggplant/Ripe Tomato1.220411

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.974650.841
1-1-2/M821.097951
12-2/M820.921610.955
12-4/M820.834281
1-3/M821.810480.248
2-1-1/M821.183230.764
2-1/M820.831980.345
2-6/M821.235920.505
3-2/M821.08647
4-1-1/M821.457150.968
4-1/M820.71346
4-3-2/M821.489830.508
4-3/M821.667751
5-3/M820.794780.447
6-2/M821.034581
6-3/M820.98811
7-1/M820.92751
7-2/M820.850080.796
9-3-2/M821.87489

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.89548
IL2-6/WTpooled1.296540.659
IL7-5/WTpooled1.859040.792
IL7-3/WTpooled1.00398
IL12-4/WTpooled0.85434
IL1-4/WTpooled1.154471
WT/WTpooled1.128931

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.102131

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.974441
DC3000/delta hrp 6h0.953270.95
DC3000/delta hrp 12h1.22781
DC3000/delta hrp 24h0.950540.607

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.430060.034
DC3000 delta B/DC3000 delta AB0.337850.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.02111
Exp 36h0.802780.589
Exp 60h0.705820.259

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.990561
Var 0h0.440180.237
Var 12h I row2-row10.756840.338
Var 12h NI row2-row11.081011
Var 36h I row2-row10.922390.805
Var 36h NI row2-row10.984040.852
Var 60h I row2-row11.531110.562
Var 60h NI row2-row11.039531
Time course 0hI-0hNI0.932760.497
Time course 12hI-12hNI1.035150.81
Time course 36hI-36hNI0.840770.024
Time course 60hI-60hNI0.116340.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.937030.614
transgenic ySAMdc/azygous control (breaker)1.561360.178
transgenic ySAMdc/azygous control (red)0.655361

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.848270.248

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.960190.227

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)6.603710.105
Manapal/WT (break)3.463790.13
Manapal/WT (red)1.157181