Expression of 1-1-6.1.1.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06851 | 0.912 |
27DAP/17DAP | 0.52394 | 0.031 |
39DAP/27DAP | 1.11306 | 0.84 |
41DAP/39DAP | 0.63566 | 0.055 |
42DAP/41DAP | 1.13725 | 0.898 |
43DAP/42DAP | 0.92415 | 0.759 |
47DAP/43DAP | 0.8737 | 0.58 |
52DAP/47DAP | 1.51778 | 0.268 |
57DAP/52DAP | 0.89038 | 0.853 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.74208 | 0.067 |
17DAP/reference | 0.56316 | 0.009 |
27DAP/reference | 0.55483 | 0.012 |
39DAP/reference | 0.60503 | 0.011 |
41DAP/reference | 0.5044 | 0.009 |
42DAP/reference | 0.84998 | 0.048 |
43DAP/reference | 0.73661 | 0.073 |
47DAP/reference | 0.74456 | 0.006 |
52DAP/reference | 0.64042 | 0.028 |
57DAP/reference | 0.86871 | 0.045 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.44375 | 0.041 |
27DAP/17DAP | 0.6842 | 0.101 |
39DAP/27DAP | 0.57581 | 0.029 |
41DAP/39DAP | 1.09378 | 0.753 |
42DAP/41DAP | 0.92141 | 0.382 |
43DAP/42DAP | 0.99298 | 0.96 |
47DAP/43DAP | 1.12336 | 0.383 |
52DAP/47DAP | 0.75808 | 0.042 |
57DAP/52DAP | 1.32042 | 0.228 |
57DAP/7DAP | 0.84236 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1523 | 0.286 |
17DAP/reference | 0.84309 | 0.02 |
27DAP/reference | 0.70285 | 0.01 |
39DAP/reference | 0.88097 | 0.043 |
41DAP/reference | 0.69937 | 0.013 |
42DAP/reference | 0.78357 | 0.011 |
43DAP/reference | 0.94478 | 0.279 |
47DAP/reference | 0.7538 | 0.04 |
52DAP/reference | 1.04139 | 0.781 |
57DAP/reference | 0.97949 | 0.477 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.54597 | 0.01 |
17DAP/reference | 0.44348 | 0.007 |
27DAP/reference | 0.66868 | 0.054 |
39DAP/reference | 0.51334 | 0.021 |
41DAP/reference | 0.65718 | 0.024 |
42DAP/reference | 0.82804 | 0.108 |
43DAP/reference | 0.35586 | 0.002 |
47DAP/reference | 0.83721 | 0.047 |
52DAP/reference | 0.71391 | 0.131 |
57DAP/reference | 0.81976 | 0.107 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.17518 | 0.018 |
17DAP/reference | 1.62149 | 0.145 |
27DAP/reference | 1.27296 | 0.051 |
39DAP/reference | 0.98925 | 0.693 |
41DAP/reference | 0.82827 | 0.096 |
42DAP/reference | 0.58733 | 0.016 |
43DAP/reference | 0.66648 | 0.018 |
47DAP/reference | 0.52277 | 0.004 |
52DAP/reference | 0.76424 | 0.164 |
57DAP/reference | 1.18683 | 0.274 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.28031 | 0.966 |
26DAP/20DAP | 1.15181 | 0.826 |
34DAP/26DAP | 0.86362 | 0.561 |
51DAP/34DAP | 0.50587 | 0.049 |
52DAP/51DAP | 0.90284 | 1 |
53DAP/52DAP | 0.91274 | 0.612 |
55DAP/53DAP | 0.78662 | 0.21 |
57DAP/55DAP | 1.33196 | 0.34 |
62DAP/57DAP | 1.70787 | 0.002 |
68DAP/62DAP | 0.89418 | 0.722 |
68DAP/14DAP | 1.00911 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.84958 | 0.186 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.27812 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.94392 | 0.66 |
Immature Eggplant/Mature Eggplant | 1.52629 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.95639 | 1 |
Mature Eggplant/Ripe Tomato | 1.22041 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.97465 | 0.841 |
1-1-2/M82 | 1.09795 | 1 |
12-2/M82 | 0.92161 | 0.955 |
12-4/M82 | 0.83428 | 1 |
1-3/M82 | 1.81048 | 0.248 |
2-1-1/M82 | 1.18323 | 0.764 |
2-1/M82 | 0.83198 | 0.345 |
2-6/M82 | 1.23592 | 0.505 |
3-2/M82 | 1.08647 | |
4-1-1/M82 | 1.45715 | 0.968 |
4-1/M82 | 0.71346 | |
4-3-2/M82 | 1.48983 | 0.508 |
4-3/M82 | 1.66775 | 1 |
5-3/M82 | 0.79478 | 0.447 |
6-2/M82 | 1.03458 | 1 |
6-3/M82 | 0.9881 | 1 |
7-1/M82 | 0.92751 | |
7-2/M82 | 0.85008 | 0.796 |
9-3-2/M82 | 1.87489 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.89548 | |
IL2-6/WTpooled | 1.29654 | 0.659 |
IL7-5/WTpooled | 1.85904 | 0.792 |
IL7-3/WTpooled | 1.00398 | |
IL12-4/WTpooled | 0.85434 | |
IL1-4/WTpooled | 1.15447 | 1 |
WT/WTpooled | 1.12893 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.10213 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97444 | 1 |
DC3000/delta hrp 6h | 0.95327 | 0.95 |
DC3000/delta hrp 12h | 1.22781 | |
DC3000/delta hrp 24h | 0.95054 | 0.607 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.43006 | 0.034 |
DC3000 delta B/DC3000 delta AB | 0.33785 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.0211 | 1 |
Exp 36h | 0.80278 | 0.589 |
Exp 60h | 0.70582 | 0.259 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99056 | 1 |
Var 0h | 0.44018 | 0.237 |
Var 12h I row2-row1 | 0.75684 | 0.338 |
Var 12h NI row2-row1 | 1.08101 | 1 |
Var 36h I row2-row1 | 0.92239 | 0.805 |
Var 36h NI row2-row1 | 0.98404 | 0.852 |
Var 60h I row2-row1 | 1.53111 | 0.562 |
Var 60h NI row2-row1 | 1.03953 | 1 |
Time course 0hI-0hNI | 0.93276 | 0.497 |
Time course 12hI-12hNI | 1.03515 | 0.81 |
Time course 36hI-36hNI | 0.84077 | 0.024 |
Time course 60hI-60hNI | 0.11634 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.93703 | 0.614 |
transgenic ySAMdc/azygous control (breaker) | 1.56136 | 0.178 |
transgenic ySAMdc/azygous control (red) | 0.65536 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.84827 | 0.248 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.96019 | 0.227 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 6.60371 | 0.105 |
Manapal/WT (break) | 3.46379 | 0.13 |
Manapal/WT (red) | 1.15718 | 1 |
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