Expression of 1-1-6.1.1.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9961 | 0.811 |
27DAP/17DAP | 0.96993 | 0.934 |
39DAP/27DAP | 1.22436 | 0.833 |
41DAP/39DAP | 0.9854 | 0.922 |
42DAP/41DAP | 0.95998 | 1 |
43DAP/42DAP | 0.95353 | 0.851 |
47DAP/43DAP | 1.00513 | 0.902 |
52DAP/47DAP | 0.982 | 0.907 |
57DAP/52DAP | 0.79833 | 0.85 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86869 | 0.07 |
17DAP/reference | 0.88538 | 0.24 |
27DAP/reference | 0.88202 | 0.176 |
39DAP/reference | 0.87521 | 0.074 |
41DAP/reference | 0.87625 | 0.031 |
42DAP/reference | 1.06231 | 0.585 |
43DAP/reference | 0.92123 | 0.302 |
47DAP/reference | 0.84059 | 0.019 |
52DAP/reference | 0.90474 | 0.215 |
57DAP/reference | 1.06543 | 0.405 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.18541 | 0.455 |
27DAP/17DAP | 0.89575 | 0.363 |
39DAP/27DAP | 0.94679 | 0.673 |
41DAP/39DAP | 1.02527 | 1 |
42DAP/41DAP | 1.22247 | 0.03 |
43DAP/42DAP | 0.90784 | 0.415 |
47DAP/43DAP | 0.9003 | 0.534 |
52DAP/47DAP | 2.6024 | 0.044 |
57DAP/52DAP | 2.6654 | 0.03 |
57DAP/7DAP | 1.98747 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89479 | 0.078 |
17DAP/reference | 0.86149 | 0.028 |
27DAP/reference | 0.87394 | 0.01 |
39DAP/reference | 0.84893 | 0.011 |
41DAP/reference | 0.8032 | 0.026 |
42DAP/reference | 0.78445 | 0.019 |
43DAP/reference | 0.80106 | 0.016 |
47DAP/reference | 0.90053 | 0.383 |
52DAP/reference | 0.77505 | 0.021 |
57DAP/reference | 0.77459 | 0.014 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87614 | 0.222 |
17DAP/reference | 0.94536 | 0.367 |
27DAP/reference | 1.09694 | 0.583 |
39DAP/reference | 1.08825 | 0.463 |
41DAP/reference | 1.10739 | 0.439 |
42DAP/reference | 0.9733 | 0.482 |
43DAP/reference | 1.05802 | 0.986 |
47DAP/reference | 1.16613 | 0.153 |
52DAP/reference | 0.91092 | 0.131 |
57DAP/reference | 1.06503 | 0.771 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91685 | 0.092 |
17DAP/reference | 0.9451 | 0.488 |
27DAP/reference | 0.8226 | 0.037 |
39DAP/reference | 0.85763 | 0.05 |
41DAP/reference | 0.87144 | 0.025 |
42DAP/reference | 0.9872 | 0.816 |
43DAP/reference | 0.86458 | 0.064 |
47DAP/reference | 0.65789 | 0.01 |
52DAP/reference | 0.77325 | 0.112 |
57DAP/reference | 0.89721 | 0.18 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03518 | 1 |
26DAP/20DAP | 2.16552 | 1 |
34DAP/26DAP | 5.33573 | 0.819 |
51DAP/34DAP | 2.16307 | 0.775 |
52DAP/51DAP | 5.49084 | 0.033 |
53DAP/52DAP | 0.57583 | 0.049 |
55DAP/53DAP | 1.63853 | 0.022 |
57DAP/55DAP | 0.39006 | 0.038 |
62DAP/57DAP | 1.48935 | 0.723 |
68DAP/62DAP | 1.28865 | 0.912 |
68DAP/14DAP | 0.75785 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.17477 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.79099 | 0.377 |
Immature Eggplant/Mature Eggplant | 8.12463 | |
Ripe Pepper/Ripe Tomato | 0.18076 | |
Mature Eggplant/Ripe Tomato | 0.3536 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.56764 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.07467 | 0.493 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.99817 | |
IL12-4/WTpooled | 0.57582 | 0.71 |
IL1-4/WTpooled | 1.0071 | 1 |
WT/WTpooled | 0.96251 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.50698 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.32401 | 0.774 |
DC3000/delta hrp 6h | 1.1534 | 1 |
DC3000/delta hrp 12h | 0.8914 | 1 |
DC3000/delta hrp 24h | 1.96118 | 0.028 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.22731 | 0.053 |
DC3000 delta B/DC3000 delta AB | 1.31277 | 0.226 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.30686 | 1 |
Exp 36h | 2.84784 | 0.693 |
Exp 60h | 2.21617 | 0.227 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04906 | 1 |
Var 0h | 0.56563 | 0.222 |
Var 12h I row2-row1 | 0.93577 | 0.856 |
Var 12h NI row2-row1 | 1.17623 | 1 |
Var 36h I row2-row1 | 1.1843 | 1 |
Var 36h NI row2-row1 | 1.64013 | 0.276 |
Var 60h I row2-row1 | 0.6331 | 0.293 |
Var 60h NI row2-row1 | 0.94327 | 1 |
Time course 0hI-0hNI | 0.87884 | 0.399 |
Time course 12hI-12hNI | 1.28805 | 0.611 |
Time course 36hI-36hNI | 1.28475 | 0.248 |
Time course 60hI-60hNI | 1.63227 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.55714 | 0.238 |
transgenic ySAMdc/azygous control (breaker) | 1.18505 | 1 |
transgenic ySAMdc/azygous control (red) | 1.34839 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04056 | 0.525 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.98827 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.46872 | 0.088 |
Manapal/WT (break) | 0.97861 | 1 |
Manapal/WT (red) | 0.65716 | 0.424 |
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