Expression of 1-1-6.1.1.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.99610.811
27DAP/17DAP0.969930.934
39DAP/27DAP1.224360.833
41DAP/39DAP0.98540.922
42DAP/41DAP0.959981
43DAP/42DAP0.953530.851
47DAP/43DAP1.005130.902
52DAP/47DAP0.9820.907
57DAP/52DAP0.798330.85

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.868690.07
17DAP/reference0.885380.24
27DAP/reference0.882020.176
39DAP/reference0.875210.074
41DAP/reference0.876250.031
42DAP/reference1.062310.585
43DAP/reference0.921230.302
47DAP/reference0.840590.019
52DAP/reference0.904740.215
57DAP/reference1.065430.405

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.185410.455
27DAP/17DAP0.895750.363
39DAP/27DAP0.946790.673
41DAP/39DAP1.025271
42DAP/41DAP1.222470.03
43DAP/42DAP0.907840.415
47DAP/43DAP0.90030.534
52DAP/47DAP2.60240.044
57DAP/52DAP2.66540.03
57DAP/7DAP1.987471

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.894790.078
17DAP/reference0.861490.028
27DAP/reference0.873940.01
39DAP/reference0.848930.011
41DAP/reference0.80320.026
42DAP/reference0.784450.019
43DAP/reference0.801060.016
47DAP/reference0.900530.383
52DAP/reference0.775050.021
57DAP/reference0.774590.014

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.876140.222
17DAP/reference0.945360.367
27DAP/reference1.096940.583
39DAP/reference1.088250.463
41DAP/reference1.107390.439
42DAP/reference0.97330.482
43DAP/reference1.058020.986
47DAP/reference1.166130.153
52DAP/reference0.910920.131
57DAP/reference1.065030.771

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.916850.092
17DAP/reference0.94510.488
27DAP/reference0.82260.037
39DAP/reference0.857630.05
41DAP/reference0.871440.025
42DAP/reference0.98720.816
43DAP/reference0.864580.064
47DAP/reference0.657890.01
52DAP/reference0.773250.112
57DAP/reference0.897210.18

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.035181
26DAP/20DAP2.165521
34DAP/26DAP5.335730.819
51DAP/34DAP2.163070.775
52DAP/51DAP5.490840.033
53DAP/52DAP0.575830.049
55DAP/53DAP1.638530.022
57DAP/55DAP0.390060.038
62DAP/57DAP1.489350.723
68DAP/62DAP1.288650.912
68DAP/14DAP0.75785

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.174770.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.790990.377
Immature Eggplant/Mature Eggplant8.12463
Ripe Pepper/Ripe Tomato0.18076
Mature Eggplant/Ripe Tomato0.35360.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.56764
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.074670.493
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.99817
IL12-4/WTpooled0.575820.71
IL1-4/WTpooled1.00711
WT/WTpooled0.962511

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.506980.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.324010.774
DC3000/delta hrp 6h1.15341
DC3000/delta hrp 12h0.89141
DC3000/delta hrp 24h1.961180.028

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.227310.053
DC3000 delta B/DC3000 delta AB1.312770.226

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.306861
Exp 36h2.847840.693
Exp 60h2.216170.227

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.049061
Var 0h0.565630.222
Var 12h I row2-row10.935770.856
Var 12h NI row2-row11.176231
Var 36h I row2-row11.18431
Var 36h NI row2-row11.640130.276
Var 60h I row2-row10.63310.293
Var 60h NI row2-row10.943271
Time course 0hI-0hNI0.878840.399
Time course 12hI-12hNI1.288050.611
Time course 36hI-36hNI1.284750.248
Time course 60hI-60hNI1.632270.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.557140.238
transgenic ySAMdc/azygous control (breaker)1.185051
transgenic ySAMdc/azygous control (red)1.348390.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.040560.525

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.988271

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.468720.088
Manapal/WT (break)0.978611
Manapal/WT (red)0.657160.424