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Expression of 1-1-6.1.10.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.948760.683
27DAP/17DAP1.210650.766
39DAP/27DAP0.737940.382
41DAP/39DAP1.243810.638
42DAP/41DAP1.247340.672
43DAP/42DAP0.988010.925
47DAP/43DAP0.959070.84
52DAP/47DAP0.971830.889
57DAP/52DAP1.119340.941

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.908380.106
17DAP/reference1.001231
27DAP/reference0.984880.668
39DAP/reference0.996310.957
41DAP/reference1.024490.552
42DAP/reference0.88640.095
43DAP/reference1.037780.547
47DAP/reference1.006771
52DAP/reference0.860840.125
57DAP/reference0.976450.503

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.044080.492
27DAP/17DAP0.961620.724
39DAP/27DAP1.062880.615
41DAP/39DAP1.015060.883
42DAP/41DAP1.022120.927
43DAP/42DAP1.062210.176
47DAP/43DAP0.989980.93
52DAP/47DAP1.02350.939
57DAP/52DAP1.000740.929
57DAP/7DAP1.021581

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.366850.069
17DAP/reference1.617960.006
27DAP/reference1.505360.008
39DAP/reference1.898710.006
41DAP/reference1.70380.023
42DAP/reference1.867460.1
43DAP/reference1.79460.008
47DAP/reference1.266850.561
52DAP/reference1.909590.007
57DAP/reference1.778520.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.994650.884
17DAP/reference0.911730.056
27DAP/reference0.861990.076
39DAP/reference0.878730.129
41DAP/reference0.8640.041
42DAP/reference0.931330.169
43DAP/reference0.857730.162
47DAP/reference1.001941
52DAP/reference0.948860.203
57DAP/reference1.020451

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.419710.031
17DAP/reference1.13510.578
27DAP/reference1.140110.056
39DAP/reference1.272430.021
41DAP/reference1.259950.026
42DAP/reference1.076720.961
43DAP/reference1.384360.172
47DAP/reference0.977130.478
52DAP/reference1.399220.295
57DAP/reference0.979770.444

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.0430.966
26DAP/20DAP1.032080.916
34DAP/26DAP1.008271
51DAP/34DAP1.017620.898
52DAP/51DAP1.015150.842
53DAP/52DAP0.96148N/A
55DAP/53DAP0.96392N/A
57DAP/55DAP1.012010.96
62DAP/57DAP0.962310.994
68DAP/62DAP1.117070.831
68DAP/14DAP1.187570.762

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.910570.033

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.985870.783
Mature Green Tomato/Ripe Tomato0.71720.079
Immature Eggplant/Mature Eggplant1.910420.05
Ripe Pepper/Ripe Tomato2.317670.258
Mature Eggplant/Ripe Tomato1.90770.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.008141
1-1-2/M821.027341
12-2/M821.126891
12-4/M821.01121
1-3/M821.026391
2-1-1/M821.09430.284
2-1/M821.124890.345
2-6/M821.077240.695
3-2/M820.83518N/A
4-1-1/M820.98631
4-1/M820.994611
4-3-2/M820.74947N/A
4-3/M820.969881
5-3/M821.036771
6-2/M821.119961
6-3/M820.889980.916
7-1/M821.082211
7-2/M821.061041
9-3-2/M820.86130.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.001251
IL2-6/WTpooled1.115660.531
IL7-5/WTpooled0.826381
IL7-3/WTpooled0.923880.418
IL12-4/WTpooled0.86940.478
IL1-4/WTpooled0.846410.562
WT/WTpooled1.069370.774

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.006431

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.926691
DC3000/delta hrp 6h1.066560.95
DC3000/delta hrp 12h0.980981
DC3000/delta hrp 24h0.921530.447

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.908410.318
DC3000 delta B/DC3000 delta AB1.021030.677

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.816581
Exp 36h1.164521
Exp 60h0.704280.454

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.017661
Var 0h1.120080.782
Var 12h I row2-row11.094890.613
Var 12h NI row2-row11.046881
Var 36h I row2-row11.004071
Var 36h NI row2-row11.317241
Var 60h I row2-row10.827860.306
Var 60h NI row2-row11.085711
Time course 0hI-0hNI0.961290.751
Time course 12hI-12hNI1.030790.818
Time course 36hI-36hNI1.106940.248
Time course 60hI-60hNI0.592030.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.863150.234
transgenic ySAMdc/azygous control (breaker)1.236240.248
transgenic ySAMdc/azygous control (red)0.776751

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.965280.156

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.196120.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.515880.086
Manapal/WT (break)0.496390.333
Manapal/WT (red)0.829830.36