Expression of 1-1-6.1.10.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94876 | 0.683 |
27DAP/17DAP | 1.21065 | 0.766 |
39DAP/27DAP | 0.73794 | 0.382 |
41DAP/39DAP | 1.24381 | 0.638 |
42DAP/41DAP | 1.24734 | 0.672 |
43DAP/42DAP | 0.98801 | 0.925 |
47DAP/43DAP | 0.95907 | 0.84 |
52DAP/47DAP | 0.97183 | 0.889 |
57DAP/52DAP | 1.11934 | 0.941 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90838 | 0.106 |
17DAP/reference | 1.00123 | 1 |
27DAP/reference | 0.98488 | 0.668 |
39DAP/reference | 0.99631 | 0.957 |
41DAP/reference | 1.02449 | 0.552 |
42DAP/reference | 0.8864 | 0.095 |
43DAP/reference | 1.03778 | 0.547 |
47DAP/reference | 1.00677 | 1 |
52DAP/reference | 0.86084 | 0.125 |
57DAP/reference | 0.97645 | 0.503 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04408 | 0.492 |
27DAP/17DAP | 0.96162 | 0.724 |
39DAP/27DAP | 1.06288 | 0.615 |
41DAP/39DAP | 1.01506 | 0.883 |
42DAP/41DAP | 1.02212 | 0.927 |
43DAP/42DAP | 1.06221 | 0.176 |
47DAP/43DAP | 0.98998 | 0.93 |
52DAP/47DAP | 1.0235 | 0.939 |
57DAP/52DAP | 1.00074 | 0.929 |
57DAP/7DAP | 1.02158 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.36685 | 0.069 |
17DAP/reference | 1.61796 | 0.006 |
27DAP/reference | 1.50536 | 0.008 |
39DAP/reference | 1.89871 | 0.006 |
41DAP/reference | 1.7038 | 0.023 |
42DAP/reference | 1.86746 | 0.1 |
43DAP/reference | 1.7946 | 0.008 |
47DAP/reference | 1.26685 | 0.561 |
52DAP/reference | 1.90959 | 0.007 |
57DAP/reference | 1.77852 | 0.005 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99465 | 0.884 |
17DAP/reference | 0.91173 | 0.056 |
27DAP/reference | 0.86199 | 0.076 |
39DAP/reference | 0.87873 | 0.129 |
41DAP/reference | 0.864 | 0.041 |
42DAP/reference | 0.93133 | 0.169 |
43DAP/reference | 0.85773 | 0.162 |
47DAP/reference | 1.00194 | 1 |
52DAP/reference | 0.94886 | 0.203 |
57DAP/reference | 1.02045 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.41971 | 0.031 |
17DAP/reference | 1.1351 | 0.578 |
27DAP/reference | 1.14011 | 0.056 |
39DAP/reference | 1.27243 | 0.021 |
41DAP/reference | 1.25995 | 0.026 |
42DAP/reference | 1.07672 | 0.961 |
43DAP/reference | 1.38436 | 0.172 |
47DAP/reference | 0.97713 | 0.478 |
52DAP/reference | 1.39922 | 0.295 |
57DAP/reference | 0.97977 | 0.444 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.043 | 0.966 |
26DAP/20DAP | 1.03208 | 0.916 |
34DAP/26DAP | 1.00827 | 1 |
51DAP/34DAP | 1.01762 | 0.898 |
52DAP/51DAP | 1.01515 | 0.842 |
53DAP/52DAP | 0.96148 | |
55DAP/53DAP | 0.96392 | |
57DAP/55DAP | 1.01201 | 0.96 |
62DAP/57DAP | 0.96231 | 0.994 |
68DAP/62DAP | 1.11707 | 0.831 |
68DAP/14DAP | 1.18757 | 0.762 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.91057 | 0.033 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.98587 | 0.783 |
Mature Green Tomato/Ripe Tomato | 0.7172 | 0.079 |
Immature Eggplant/Mature Eggplant | 1.91042 | 0.05 |
Ripe Pepper/Ripe Tomato | 2.31767 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.9077 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00814 | 1 |
1-1-2/M82 | 1.02734 | 1 |
12-2/M82 | 1.12689 | 1 |
12-4/M82 | 1.0112 | 1 |
1-3/M82 | 1.02639 | 1 |
2-1-1/M82 | 1.0943 | 0.284 |
2-1/M82 | 1.12489 | 0.345 |
2-6/M82 | 1.07724 | 0.695 |
3-2/M82 | 0.83518 | |
4-1-1/M82 | 0.9863 | 1 |
4-1/M82 | 0.99461 | 1 |
4-3-2/M82 | 0.74947 | |
4-3/M82 | 0.96988 | 1 |
5-3/M82 | 1.03677 | 1 |
6-2/M82 | 1.11996 | 1 |
6-3/M82 | 0.88998 | 0.916 |
7-1/M82 | 1.08221 | 1 |
7-2/M82 | 1.06104 | 1 |
9-3-2/M82 | 0.8613 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.00125 | 1 |
IL2-6/WTpooled | 1.11566 | 0.531 |
IL7-5/WTpooled | 0.82638 | 1 |
IL7-3/WTpooled | 0.92388 | 0.418 |
IL12-4/WTpooled | 0.8694 | 0.478 |
IL1-4/WTpooled | 0.84641 | 0.562 |
WT/WTpooled | 1.06937 | 0.774 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.00643 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.92669 | 1 |
DC3000/delta hrp 6h | 1.06656 | 0.95 |
DC3000/delta hrp 12h | 0.98098 | 1 |
DC3000/delta hrp 24h | 0.92153 | 0.447 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.90841 | 0.318 |
DC3000 delta B/DC3000 delta AB | 1.02103 | 0.677 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.81658 | 1 |
Exp 36h | 1.16452 | 1 |
Exp 60h | 0.70428 | 0.454 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01766 | 1 |
Var 0h | 1.12008 | 0.782 |
Var 12h I row2-row1 | 1.09489 | 0.613 |
Var 12h NI row2-row1 | 1.04688 | 1 |
Var 36h I row2-row1 | 1.00407 | 1 |
Var 36h NI row2-row1 | 1.31724 | 1 |
Var 60h I row2-row1 | 0.82786 | 0.306 |
Var 60h NI row2-row1 | 1.08571 | 1 |
Time course 0hI-0hNI | 0.96129 | 0.751 |
Time course 12hI-12hNI | 1.03079 | 0.818 |
Time course 36hI-36hNI | 1.10694 | 0.248 |
Time course 60hI-60hNI | 0.59203 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.86315 | 0.234 |
transgenic ySAMdc/azygous control (breaker) | 1.23624 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.77675 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96528 | 0.156 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.19612 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.51588 | 0.086 |
Manapal/WT (break) | 0.49639 | 0.333 |
Manapal/WT (red) | 0.82983 | 0.36 |
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