Expression of 1-1-6.1.11.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98947 | 0.901 |
27DAP/17DAP | 1.31799 | 0.872 |
39DAP/27DAP | 0.73973 | 0.474 |
41DAP/39DAP | 0.597 | 0.136 |
42DAP/41DAP | 0.81555 | 1 |
43DAP/42DAP | 0.98402 | 0.937 |
47DAP/43DAP | 0.91274 | 0.716 |
52DAP/47DAP | 0.89011 | 0.626 |
57DAP/52DAP | 0.80903 | 0.879 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96157 | 0.3 |
17DAP/reference | 1.05484 | 0.282 |
27DAP/reference | 0.99949 | 0.904 |
39DAP/reference | 1.02804 | 0.691 |
41DAP/reference | 1.03068 | 0.714 |
42DAP/reference | 0.96578 | 0.134 |
43DAP/reference | 0.97495 | 0.675 |
47DAP/reference | 0.95656 | 0.174 |
52DAP/reference | 0.92914 | 0.36 |
57DAP/reference | 1.04427 | 0.662 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.2367 | 0.5 |
27DAP/17DAP | 1.04627 | 1 |
39DAP/27DAP | 1.5612 | 0.429 |
41DAP/39DAP | 1.11782 | 0.895 |
42DAP/41DAP | 1.18466 | 0.74 |
43DAP/42DAP | 1.13751 | 0.554 |
47DAP/43DAP | 0.72061 | 0.339 |
52DAP/47DAP | 0.93085 | 0.77 |
57DAP/52DAP | 1.08787 | 0.722 |
57DAP/7DAP | 0.75808 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.29683 | 0.11 |
17DAP/reference | 1.21752 | 0.437 |
27DAP/reference | 1.25862 | 0.049 |
39DAP/reference | 1.27801 | 0.014 |
41DAP/reference | 1.17992 | 0.232 |
42DAP/reference | 1.09847 | 0.686 |
43DAP/reference | 1.38388 | 0.008 |
47DAP/reference | 0.96648 | 0.671 |
52DAP/reference | 1.19623 | 0.113 |
57DAP/reference | 1.06329 | 0.571 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05581 | 0.687 |
17DAP/reference | 0.97381 | 0.447 |
27DAP/reference | 0.89982 | 0.058 |
39DAP/reference | 0.84947 | 0.097 |
41DAP/reference | 0.94859 | 0.322 |
42DAP/reference | 1.16944 | 0.519 |
43DAP/reference | 0.92976 | 0.378 |
47DAP/reference | 1.10671 | 0.084 |
52DAP/reference | 0.91923 | 0.051 |
57DAP/reference | 1.00469 | 0.916 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19386 | 0.709 |
17DAP/reference | 0.99337 | 0.778 |
27DAP/reference | 1.66073 | 0.085 |
39DAP/reference | 1.0946 | 0.175 |
41DAP/reference | 1.19327 | 0.029 |
42DAP/reference | 1.09974 | 0.68 |
43DAP/reference | 1.2932 | 0.179 |
47DAP/reference | 0.94552 | 0.315 |
52DAP/reference | 1.13828 | 0.349 |
57DAP/reference | 0.8501 | 0.138 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99346 | 1 |
26DAP/20DAP | 1.60726 | 0.22 |
34DAP/26DAP | 0.81968 | 0.909 |
51DAP/34DAP | 1.17202 | 0.936 |
52DAP/51DAP | 0.83668 | 1 |
53DAP/52DAP | 1.45886 | 0.797 |
55DAP/53DAP | 0.66622 | 0.016 |
57DAP/55DAP | 1.4399 | |
62DAP/57DAP | 1.14373 | 0.833 |
68DAP/62DAP | 1.11257 | 0.405 |
68DAP/14DAP | 1.12511 | 0.403 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.95196 | 0.607 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.88687 | 0.401 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 1.11045 | 0.417 |
Ripe Pepper/Ripe Tomato | 11.0907 | 1 |
Mature Eggplant/Ripe Tomato | 2.26908 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.97898 | 0.961 |
1-1-2/M82 | 0.96837 | 1 |
12-2/M82 | 1.00051 | 1 |
12-4/M82 | 1.03616 | 1 |
1-3/M82 | 0.92008 | 0.378 |
2-1-1/M82 | 0.99101 | 1 |
2-1/M82 | 1.06524 | 1 |
2-6/M82 | 0.93999 | 0.501 |
3-2/M82 | 0.97891 | |
4-1-1/M82 | 1.01847 | 1 |
4-1/M82 | 0.97165 | |
4-3-2/M82 | 0.8686 | |
4-3/M82 | 0.96725 | 1 |
5-3/M82 | 0.97282 | 1 |
6-2/M82 | 1.01512 | 1 |
6-3/M82 | 1.0548 | 1 |
7-1/M82 | 1.06933 | 0.598 |
7-2/M82 | 1.02597 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.98347 | 1 |
IL2-6/WTpooled | 1.69749 | 0.395 |
IL7-5/WTpooled | 0.97241 | 1 |
IL7-3/WTpooled | 0.847 | 1 |
IL12-4/WTpooled | 0.95896 | 1 |
IL1-4/WTpooled | 1.74575 | 1 |
WT/WTpooled | 1.0228 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.48794 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05673 | 0.921 |
DC3000/delta hrp 6h | 1.08553 | 0.95 |
DC3000/delta hrp 12h | 0.96285 | 1 |
DC3000/delta hrp 24h | 1.01982 | 0.743 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.63511 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 0.91854 | 0.165 |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.98352 | 1 |
Var 12h I row2-row1 | 0.63138 | 0.31 |
Var 12h NI row2-row1 | 1.97301 | 1 |
Var 36h I row2-row1 | 0.59579 | |
Var 36h NI row2-row1 | 2.27527 | 1 |
Var 60h I row2-row1 | 0.58681 | 0.374 |
Var 60h NI row2-row1 | 1.34382 | 0.904 |
Time course 0hI-0hNI | 1.13648 | 0.852 |
Time course 12hI-12hNI | 1.05457 | 0.888 |
Time course 36hI-36hNI | 0.59525 | 0.306 |
Time course 60hI-60hNI | 0.64867 | 0.161 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.81958 | 0.3 |
transgenic ySAMdc/azygous control (breaker) | 1.59196 | 1 |
transgenic ySAMdc/azygous control (red) | 1.41661 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96451 | 0.242 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.04717 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.18132 | 0.14 |
Manapal/WT (break) | 1.49282 | 0.381 |
Manapal/WT (red) | 1.53013 | 0.164 |
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