Expression of 1-1-6.1.11.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.989470.901
27DAP/17DAP1.317990.872
39DAP/27DAP0.739730.474
41DAP/39DAP0.5970.136
42DAP/41DAP0.815551
43DAP/42DAP0.984020.937
47DAP/43DAP0.912740.716
52DAP/47DAP0.890110.626
57DAP/52DAP0.809030.879

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.961570.3
17DAP/reference1.054840.282
27DAP/reference0.999490.904
39DAP/reference1.028040.691
41DAP/reference1.030680.714
42DAP/reference0.965780.134
43DAP/reference0.974950.675
47DAP/reference0.956560.174
52DAP/reference0.929140.36
57DAP/reference1.044270.662

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.23670.5
27DAP/17DAP1.046271
39DAP/27DAP1.56120.429
41DAP/39DAP1.117820.895
42DAP/41DAP1.184660.74
43DAP/42DAP1.137510.554
47DAP/43DAP0.720610.339
52DAP/47DAP0.930850.77
57DAP/52DAP1.087870.722
57DAP/7DAP0.758081

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.296830.11
17DAP/reference1.217520.437
27DAP/reference1.258620.049
39DAP/reference1.278010.014
41DAP/reference1.179920.232
42DAP/reference1.098470.686
43DAP/reference1.383880.008
47DAP/reference0.966480.671
52DAP/reference1.196230.113
57DAP/reference1.063290.571

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.055810.687
17DAP/reference0.973810.447
27DAP/reference0.899820.058
39DAP/reference0.849470.097
41DAP/reference0.948590.322
42DAP/reference1.169440.519
43DAP/reference0.929760.378
47DAP/reference1.106710.084
52DAP/reference0.919230.051
57DAP/reference1.004690.916

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.193860.709
17DAP/reference0.993370.778
27DAP/reference1.660730.085
39DAP/reference1.09460.175
41DAP/reference1.193270.029
42DAP/reference1.099740.68
43DAP/reference1.29320.179
47DAP/reference0.945520.315
52DAP/reference1.138280.349
57DAP/reference0.85010.138

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.993461
26DAP/20DAP1.607260.22
34DAP/26DAP0.819680.909
51DAP/34DAP1.172020.936
52DAP/51DAP0.836681
53DAP/52DAP1.458860.797
55DAP/53DAP0.666220.016
57DAP/55DAP1.4399
62DAP/57DAP1.143730.833
68DAP/62DAP1.112570.405
68DAP/14DAP1.125110.403

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.951960.607

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.886870.401
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant1.110450.417
Ripe Pepper/Ripe Tomato11.09071
Mature Eggplant/Ripe Tomato2.269080.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.978980.961
1-1-2/M820.968371
12-2/M821.000511
12-4/M821.036161
1-3/M820.920080.378
2-1-1/M820.991011
2-1/M821.065241
2-6/M820.939990.501
3-2/M820.97891
4-1-1/M821.018471
4-1/M820.97165
4-3-2/M820.8686
4-3/M820.967251
5-3/M820.972821
6-2/M821.015121
6-3/M821.05481
7-1/M821.069330.598
7-2/M821.025971
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.983471
IL2-6/WTpooled1.697490.395
IL7-5/WTpooled0.972411
IL7-3/WTpooled0.8471
IL12-4/WTpooled0.958961
IL1-4/WTpooled1.745751
WT/WTpooled1.02281

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.48794

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.056730.921
DC3000/delta hrp 6h1.085530.95
DC3000/delta hrp 12h0.962851
DC3000/delta hrp 24h1.019820.743

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.63511

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h0.918540.165
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.983521
Var 12h I row2-row10.631380.31
Var 12h NI row2-row11.973011
Var 36h I row2-row10.59579
Var 36h NI row2-row12.275271
Var 60h I row2-row10.586810.374
Var 60h NI row2-row11.343820.904
Time course 0hI-0hNI1.136480.852
Time course 12hI-12hNI1.054570.888
Time course 36hI-36hNI0.595250.306
Time course 60hI-60hNI0.648670.161

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.819580.3
transgenic ySAMdc/azygous control (breaker)1.591961
transgenic ySAMdc/azygous control (red)1.416610.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.964510.242

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.047171

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.181320.14
Manapal/WT (break)1.492820.381
Manapal/WT (red)1.530130.164