Tomato Functional Genomics Database (TFGD)

Expression of 1-1-6.1.11.21

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.08527	0.739
27DAP/17DAP	1.16526	0.842
39DAP/27DAP	0.79617	0.462
41DAP/39DAP	1.42986	0.212
42DAP/41DAP	1.23892	0.825
43DAP/42DAP	1.12803	0.906
47DAP/43DAP	0.95218	0.821
52DAP/47DAP	1.27025	0.485
57DAP/52DAP	0.91965	0.92

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.91022	0.162
17DAP/reference	1.01707	0.717
27DAP/reference	1.00743	0.996
39DAP/reference	1.04367	0.343
41DAP/reference	0.98003	0.542
42DAP/reference	0.89227	0.019
43DAP/reference	1.01462	0.705
47DAP/reference	0.87008	0.009
52DAP/reference	0.80825	0.108
57DAP/reference	0.79318	0.014

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.9403	0.542
27DAP/17DAP	1.00538	1
39DAP/27DAP	1.06733	0.626
41DAP/39DAP	1.1149	0.801
42DAP/41DAP	1.05771	0.773
43DAP/42DAP	1.07809	0.446
47DAP/43DAP	1.07134	0.699
52DAP/47DAP	1.00984	0.986
57DAP/52DAP	1.05461	0.686
57DAP/7DAP	1.26194	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.89783	0.146
17DAP/reference	0.90648	0.014
27DAP/reference	0.89638	0.01
39DAP/reference	0.94531	0.049
41DAP/reference	0.87188	0.04
42DAP/reference	0.90555	0.015
43DAP/reference	0.865	0.033
47DAP/reference	0.81918	0.057
52DAP/reference	0.82743	0.046
57DAP/reference	0.85154	0.012

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.00569	0.951
17DAP/reference	0.91032	0.092
27DAP/reference	0.8393	0.111
39DAP/reference	0.79069	0.039
41DAP/reference	0.77306	0.042
42DAP/reference	0.90691	0.212
43DAP/reference	0.93604	0.423
47DAP/reference	0.95326	0.246
52DAP/reference	0.93734	0.239
57DAP/reference	0.93407	0.318

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.91208	0.104
17DAP/reference	0.9651	0.579
27DAP/reference	0.98222	0.23
39DAP/reference	0.94513	0.05
41DAP/reference	0.92084	0.185
42DAP/reference	0.7815	0.172
43DAP/reference	0.80025	0.116
47DAP/reference	0.8898	0.259
52DAP/reference	0.94621	0.455
57DAP/reference	0.49763	0.016

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.03374	0.966
26DAP/20DAP	0.92137	0.512
34DAP/26DAP	1.01076	1
51DAP/34DAP	1.27123	0.207
52DAP/51DAP	1.00419	1
53DAP/52DAP	1.09153	0.697
55DAP/53DAP	1.10208	0.876
57DAP/55DAP	0.83479	0.256
62DAP/57DAP	1.08437	0.35
68DAP/62DAP	1.1262	0.7
68DAP/14DAP	1.07504	0.958

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.94997	0.466

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	1.38431	0.287
Mature Green Tomato/Ripe Tomato	0.68153	0.022
Immature Eggplant/Mature Eggplant	1.19091	0.078
Ripe Pepper/Ripe Tomato	1.45789	0.251
Mature Eggplant/Ripe Tomato	0.98148	1

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	1.03618	1
1-1-2/M82	0.92537	1
12-2/M82	1.13282	1
12-4/M82	0.81808	0.619
1-3/M82	0.95302	1
2-1-1/M82	0.97704	1
2-1/M82	1.3715	1
2-6/M82	1.08037	0.425
3-2/M82	0.83645
4-1-1/M82	0.96453	1
4-1/M82	0.71998	1
4-3-2/M82	0.81018	0.487
4-3/M82	0.99936	1
5-3/M82	0.92094	0.642
6-2/M82	1.02208	1
6-3/M82	1.02583	1
7-1/M82	0.93277
7-2/M82	0.98092	1
9-3-2/M82	0.83034	0.355

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.16296	0.365
IL2-6/WTpooled	0.8856	1
IL7-5/WTpooled	0.65467
IL7-3/WTpooled	1.15966	1
IL12-4/WTpooled	0.96903	1
IL1-4/WTpooled	0.88902	0.699
WT/WTpooled	1.07939	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.02686	1

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.08264	0.894
DC3000/delta hrp 6h	1.13328	0.978
DC3000/delta hrp 12h	1.1274	1
DC3000/delta hrp 24h	0.95953	0.662

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	0.9038
DC3000 delta B/DC3000 delta AB	1.08104	0.472

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	1.29099	0.693
Exp 60h	0.9623	0.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.02909	1
Var 0h	0.7506	1
Var 12h I row2-row1	1.0755	0.324
Var 12h NI row2-row1	1.0194	1
Var 36h I row2-row1	0.96985	1
Var 36h NI row2-row1	0.83509	0.584
Var 60h I row2-row1	1.3317	0.562
Var 60h NI row2-row1	1.18188	0.904
Time course 0hI-0hNI	1.05629	0.852
Time course 12hI-12hNI	0.96394	0.752
Time course 36hI-36hNI	1.00347	0.826
Time course 60hI-60hNI	1.20289	0.042

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.06479	0.397
transgenic ySAMdc/azygous control (breaker)	1.06515	1
transgenic ySAMdc/azygous control (red)	0.93219	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.06077	0.115

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.62857	0.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.92433	1
Manapal/WT (break)	0.95546	1
Manapal/WT (red)	1.08656	1