Expression of 1-1-6.1.11.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.42428 | 0.359 |
27DAP/17DAP | 1.47485 | 0.809 |
39DAP/27DAP | 0.89954 | 0.573 |
41DAP/39DAP | 1.18898 | 0.728 |
42DAP/41DAP | 1.10629 | 1 |
43DAP/42DAP | 1.09721 | 0.993 |
47DAP/43DAP | 1.20508 | 0.481 |
52DAP/47DAP | 0.94348 | 0.746 |
57DAP/52DAP | 1.49065 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91237 | 0.55 |
17DAP/reference | 1.07463 | 0.492 |
27DAP/reference | 1.02636 | 0.794 |
39DAP/reference | 1.13227 | 0.072 |
41DAP/reference | 1.16607 | 0.043 |
42DAP/reference | 0.89087 | 0.05 |
43DAP/reference | 1.42634 | 0.471 |
47DAP/reference | 0.88753 | 0.012 |
52DAP/reference | 0.7115 | 0.172 |
57DAP/reference | 0.73326 | 0.03 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.2575 | 0.406 |
27DAP/17DAP | 1.15573 | 0.681 |
39DAP/27DAP | 0.80625 | 0.194 |
41DAP/39DAP | 1.04686 | 1 |
42DAP/41DAP | 1.74289 | 0.687 |
43DAP/42DAP | 1.11019 | 0.788 |
47DAP/43DAP | 0.8046 | 0.243 |
52DAP/47DAP | 1.57089 | 0.151 |
57DAP/52DAP | 0.95996 | 0.745 |
57DAP/7DAP | 0.87442 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79643 | 0.065 |
17DAP/reference | 0.7415 | 0.014 |
27DAP/reference | 0.68903 | 0.01 |
39DAP/reference | 0.79864 | 0.073 |
41DAP/reference | 0.68045 | 0.013 |
42DAP/reference | 0.66226 | 0.017 |
43DAP/reference | 0.59397 | 0.011 |
47DAP/reference | 0.72244 | 0.034 |
52DAP/reference | 0.62442 | 0.012 |
57DAP/reference | 0.77085 | 0.021 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92171 | 0.475 |
17DAP/reference | 0.89296 | 0.23 |
27DAP/reference | 0.81308 | 0.22 |
39DAP/reference | 0.9408 | 0.381 |
41DAP/reference | 0.78573 | 0.057 |
42DAP/reference | 0.97801 | |
43DAP/reference | 1.09363 | 0.713 |
47DAP/reference | 1.211 | |
52DAP/reference | 0.93126 | 0.121 |
57DAP/reference | 1.09974 | 0.345 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79856 | 0.05 |
17DAP/reference | 0.95281 | 0.537 |
27DAP/reference | 0.78121 | 0.038 |
39DAP/reference | 0.7321 | 0.013 |
41DAP/reference | 0.77854 | 0.022 |
42DAP/reference | 0.693 | 0.018 |
43DAP/reference | 0.77572 | 0.076 |
47DAP/reference | 0.93179 | 0.278 |
52DAP/reference | 0.78715 | 0.123 |
57DAP/reference | 0.5923 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.08819 | 0.966 |
26DAP/20DAP | 0.64673 | 1 |
34DAP/26DAP | 1.49255 | 0.819 |
51DAP/34DAP | 1.14246 | 1 |
52DAP/51DAP | 1.427 | 0.13 |
53DAP/52DAP | 0.81853 | 0.417 |
55DAP/53DAP | 1.16289 | 0.806 |
57DAP/55DAP | 0.7661 | 0.386 |
62DAP/57DAP | 1.10257 | 0.569 |
68DAP/62DAP | 0.9657 | 0.81 |
68DAP/14DAP | 0.88718 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.74611 | 0.031 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.09436 | 1 |
Mature Eggplant/Ripe Tomato | 0.37 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 4.98782 | 0.277 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.02419 | |
IL12-4/WTpooled | 4.27764 | 0.406 |
IL1-4/WTpooled | 1.07483 | 1 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.16213 | 0.921 |
DC3000/delta hrp 6h | 2.92412 | |
DC3000/delta hrp 12h | 1.10136 | 1 |
DC3000/delta hrp 24h | 1.13457 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.05342 | |
DC3000 delta B/DC3000 delta AB | 0.89976 | 0.657 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02289 | 1 |
Var 0h | 1.23996 | 0.936 |
Var 12h I row2-row1 | 1.03078 | 0.692 |
Var 12h NI row2-row1 | 0.80577 | 0.349 |
Var 36h I row2-row1 | 1.03193 | 1 |
Var 36h NI row2-row1 | 1.03313 | 1 |
Var 60h I row2-row1 | 1.16801 | |
Var 60h NI row2-row1 | 1.29981 | 0.793 |
Time course 0hI-0hNI | 0.86303 | 0.415 |
Time course 12hI-12hNI | 0.98785 | 0.956 |
Time course 36hI-36hNI | 0.78589 | 0.026 |
Time course 60hI-60hNI | 0.40907 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.20253 | 0.331 |
transgenic ySAMdc/azygous control (breaker) | 1.37572 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.31565 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.48284 | 1 |
Manapal/WT (break) | 0.71226 | 1 |
Manapal/WT (red) | 0.33059 | 0.181 |
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