Tomato Functional Genomics Database (TFGD)

Expression of 1-1-6.1.11.7

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.42428	0.359
27DAP/17DAP	1.47485	0.809
39DAP/27DAP	0.89954	0.573
41DAP/39DAP	1.18898	0.728
42DAP/41DAP	1.10629	1
43DAP/42DAP	1.09721	0.993
47DAP/43DAP	1.20508	0.481
52DAP/47DAP	0.94348	0.746
57DAP/52DAP	1.49065	1

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.91237	0.55
17DAP/reference	1.07463	0.492
27DAP/reference	1.02636	0.794
39DAP/reference	1.13227	0.072
41DAP/reference	1.16607	0.043
42DAP/reference	0.89087	0.05
43DAP/reference	1.42634	0.471
47DAP/reference	0.88753	0.012
52DAP/reference	0.7115	0.172
57DAP/reference	0.73326	0.03

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.2575	0.406
27DAP/17DAP	1.15573	0.681
39DAP/27DAP	0.80625	0.194
41DAP/39DAP	1.04686	1
42DAP/41DAP	1.74289	0.687
43DAP/42DAP	1.11019	0.788
47DAP/43DAP	0.8046	0.243
52DAP/47DAP	1.57089	0.151
57DAP/52DAP	0.95996	0.745
57DAP/7DAP	0.87442	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.79643	0.065
17DAP/reference	0.7415	0.014
27DAP/reference	0.68903	0.01
39DAP/reference	0.79864	0.073
41DAP/reference	0.68045	0.013
42DAP/reference	0.66226	0.017
43DAP/reference	0.59397	0.011
47DAP/reference	0.72244	0.034
52DAP/reference	0.62442	0.012
57DAP/reference	0.77085	0.021

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.92171	0.475
17DAP/reference	0.89296	0.23
27DAP/reference	0.81308	0.22
39DAP/reference	0.9408	0.381
41DAP/reference	0.78573	0.057
42DAP/reference	0.97801
43DAP/reference	1.09363	0.713
47DAP/reference	1.211
52DAP/reference	0.93126	0.121
57DAP/reference	1.09974	0.345

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.79856	0.05
17DAP/reference	0.95281	0.537
27DAP/reference	0.78121	0.038
39DAP/reference	0.7321	0.013
41DAP/reference	0.77854	0.022
42DAP/reference	0.693	0.018
43DAP/reference	0.77572	0.076
47DAP/reference	0.93179	0.278
52DAP/reference	0.78715	0.123
57DAP/reference	0.5923	0.016

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.08819	0.966
26DAP/20DAP	0.64673	1
34DAP/26DAP	1.49255	0.819
51DAP/34DAP	1.14246	1
52DAP/51DAP	1.427	0.13
53DAP/52DAP	0.81853	0.417
55DAP/53DAP	1.16289	0.806
57DAP/55DAP	0.7661	0.386
62DAP/57DAP	1.10257	0.569
68DAP/62DAP	0.9657	0.81
68DAP/14DAP	0.88718	0.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.74611	0.031

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	0.09436	1
Mature Eggplant/Ripe Tomato	0.37

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	4.98782	0.277
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	1.02419
IL12-4/WTpooled	4.27764	0.406
IL1-4/WTpooled	1.07483	1
WT/WTpooled	N/A	N/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.16213	0.921
DC3000/delta hrp 6h	2.92412
DC3000/delta hrp 12h	1.10136	1
DC3000/delta hrp 24h	1.13457	1

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	1.05342
DC3000 delta B/DC3000 delta AB	0.89976	0.657

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.02289	1
Var 0h	1.23996	0.936
Var 12h I row2-row1	1.03078	0.692
Var 12h NI row2-row1	0.80577	0.349
Var 36h I row2-row1	1.03193	1
Var 36h NI row2-row1	1.03313	1
Var 60h I row2-row1	1.16801
Var 60h NI row2-row1	1.29981	0.793
Time course 0hI-0hNI	0.86303	0.415
Time course 12hI-12hNI	0.98785	0.956
Time course 36hI-36hNI	0.78589	0.026
Time course 60hI-60hNI	0.40907	0.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.20253	0.331
transgenic ySAMdc/azygous control (breaker)	1.37572	0.248
transgenic ySAMdc/azygous control (red)	1.31565	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.48284	1
Manapal/WT (break)	0.71226	1
Manapal/WT (red)	0.33059	0.181