Expression of 1-1-6.1.11.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.424280.359
27DAP/17DAP1.474850.809
39DAP/27DAP0.899540.573
41DAP/39DAP1.188980.728
42DAP/41DAP1.106291
43DAP/42DAP1.097210.993
47DAP/43DAP1.205080.481
52DAP/47DAP0.943480.746
57DAP/52DAP1.490651

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.912370.55
17DAP/reference1.074630.492
27DAP/reference1.026360.794
39DAP/reference1.132270.072
41DAP/reference1.166070.043
42DAP/reference0.890870.05
43DAP/reference1.426340.471
47DAP/reference0.887530.012
52DAP/reference0.71150.172
57DAP/reference0.733260.03

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.25750.406
27DAP/17DAP1.155730.681
39DAP/27DAP0.806250.194
41DAP/39DAP1.046861
42DAP/41DAP1.742890.687
43DAP/42DAP1.110190.788
47DAP/43DAP0.80460.243
52DAP/47DAP1.570890.151
57DAP/52DAP0.959960.745
57DAP/7DAP0.874421

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.796430.065
17DAP/reference0.74150.014
27DAP/reference0.689030.01
39DAP/reference0.798640.073
41DAP/reference0.680450.013
42DAP/reference0.662260.017
43DAP/reference0.593970.011
47DAP/reference0.722440.034
52DAP/reference0.624420.012
57DAP/reference0.770850.021

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.921710.475
17DAP/reference0.892960.23
27DAP/reference0.813080.22
39DAP/reference0.94080.381
41DAP/reference0.785730.057
42DAP/reference0.97801
43DAP/reference1.093630.713
47DAP/reference1.211
52DAP/reference0.931260.121
57DAP/reference1.099740.345

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.798560.05
17DAP/reference0.952810.537
27DAP/reference0.781210.038
39DAP/reference0.73210.013
41DAP/reference0.778540.022
42DAP/reference0.6930.018
43DAP/reference0.775720.076
47DAP/reference0.931790.278
52DAP/reference0.787150.123
57DAP/reference0.59230.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.088190.966
26DAP/20DAP0.646731
34DAP/26DAP1.492550.819
51DAP/34DAP1.142461
52DAP/51DAP1.4270.13
53DAP/52DAP0.818530.417
55DAP/53DAP1.162890.806
57DAP/55DAP0.76610.386
62DAP/57DAP1.102570.569
68DAP/62DAP0.96570.81
68DAP/14DAP0.887180.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.746110.031

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.094361
Mature Eggplant/Ripe Tomato0.37

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled4.987820.277
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.02419
IL12-4/WTpooled4.277640.406
IL1-4/WTpooled1.074831
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.162130.921
DC3000/delta hrp 6h2.92412
DC3000/delta hrp 12h1.101361
DC3000/delta hrp 24h1.134571

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.05342
DC3000 delta B/DC3000 delta AB0.899760.657

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.022891
Var 0h1.239960.936
Var 12h I row2-row11.030780.692
Var 12h NI row2-row10.805770.349
Var 36h I row2-row11.031931
Var 36h NI row2-row11.033131
Var 60h I row2-row11.16801
Var 60h NI row2-row11.299810.793
Time course 0hI-0hNI0.863030.415
Time course 12hI-12hNI0.987850.956
Time course 36hI-36hNI0.785890.026
Time course 60hI-60hNI0.409070.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.202530.331
transgenic ySAMdc/azygous control (breaker)1.375720.248
transgenic ySAMdc/azygous control (red)1.315650.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.482841
Manapal/WT (break)0.712261
Manapal/WT (red)0.330590.181