Tomato Functional Genomics Database (TFGD)

Expression of 1-1-6.1.11.8

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.31011	0.315
27DAP/17DAP	1.85074	0.215
39DAP/27DAP	0.73651	0.286
41DAP/39DAP	1.30983	0.392
42DAP/41DAP	1.33661	0.578
43DAP/42DAP	1.08282	0.968
47DAP/43DAP	0.9699	0.864
52DAP/47DAP	1.10673	0.818
57DAP/52DAP	0.96393	0.956

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.92465	0.217
17DAP/reference	0.98832	0.777
27DAP/reference	0.98719	0.741
39DAP/reference	1.03096	0.628
41DAP/reference	1.01998	1
42DAP/reference	0.90161	0.013
43DAP/reference	1.01439	0.899
47DAP/reference	0.83732	0.005
52DAP/reference	0.90345	0.3
57DAP/reference	0.81718	0.042

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.1814	0.719
27DAP/17DAP	1.1182	0.957
39DAP/27DAP	1.31417	0.394
41DAP/39DAP	0.87067	0.265
42DAP/41DAP	1.28049	0.601
43DAP/42DAP	1.00612	1
47DAP/43DAP	0.95011	0.796
52DAP/47DAP	0.9073	0.71
57DAP/52DAP	0.78987	0.061
57DAP/7DAP	1.02929	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.94101	0.157
17DAP/reference	0.89014	0.031
27DAP/reference	0.88422	0.03
39DAP/reference	1.06557	0.222
41DAP/reference	0.93174	0.043
42DAP/reference	1.01301	1
43DAP/reference	0.94261	0.175
47DAP/reference	0.93781	0.293
52DAP/reference	0.92489	0.137
57DAP/reference	0.92014	0.033

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.98465	0.786
17DAP/reference	0.92274	0.116
27DAP/reference	0.81034	0.074
39DAP/reference	0.83365	0.097
41DAP/reference	0.81686	0.024
42DAP/reference	0.99583	0.534
43DAP/reference	1.01901	1
47DAP/reference	0.94699	0.201
52DAP/reference	0.85718	0.055
57DAP/reference	1.04143	0.593

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.81602	0.039
17DAP/reference	0.96866	0.615
27DAP/reference	0.84936	0.097
39DAP/reference	0.84754	0.012
41DAP/reference	0.95931	0.331
42DAP/reference	0.81103	0.087
43DAP/reference	0.65928	0.025
47DAP/reference	0.90163	0.168
52DAP/reference	0.82624	0.211
57DAP/reference	0.56173	0.016

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.00772	0.966
26DAP/20DAP	0.66839	1
34DAP/26DAP	1.0396	1
51DAP/34DAP	0.88515	0.579
52DAP/51DAP	1.08098	0.848
53DAP/52DAP	1.65172	0.723
55DAP/53DAP	1.12724	0.904
57DAP/55DAP	1.26462	0.947
62DAP/57DAP	1.22866	0.767
68DAP/62DAP	1.02609	0.885
68DAP/14DAP	1.03428	0.915

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.18628	0.814

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	2.07299	0.106
Immature Eggplant/Mature Eggplant	8.28924	0.05
Ripe Pepper/Ripe Tomato	0.65753	1
Mature Eggplant/Ripe Tomato	75.7454	0.373

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	0.9471	0.736
1-1-2/M82	0.86802	1
12-2/M82	1.08094	1
12-4/M82	0.9736	1
1-3/M82	0.73831	0.378
2-1-1/M82	1.1226	0.439
2-1/M82	1.07118	1
2-6/M82	1.13427	0.695
3-2/M82	0.96898
4-1-1/M82	1.07312	1
4-1/M82	1.20455	0.444
4-3-2/M82	0.81836	1
4-3/M82	0.88443	0.72
5-3/M82	1.00631	1
6-2/M82	1.0284
6-3/M82	0.94159	0.982
7-1/M82	0.93987	0.803
7-2/M82	1.0324	1
9-3-2/M82	1.0337

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.93871	1
IL2-6/WTpooled	0.95832	1
IL7-5/WTpooled	0.80364	1
IL7-3/WTpooled	1.03014	1
IL12-4/WTpooled	0.94147	1
IL1-4/WTpooled	0.81208	0.562
WT/WTpooled	0.96761	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.03468	0.921
DC3000/delta hrp 6h	1.35342	1
DC3000/delta hrp 12h	1.04269	1
DC3000/delta hrp 24h	1.00433	0.84

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	1.03684	0.693
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	0.98387	1
Var 0h	1.02734	1
Var 12h I row2-row1	0.93914	0.856
Var 12h NI row2-row1	0.52705	0.384
Var 36h I row2-row1	0.8582	1
Var 36h NI row2-row1	1.21644	1
Var 60h I row2-row1	0.63275	0.582
Var 60h NI row2-row1	1.25445	1
Time course 0hI-0hNI	1.14951	0.662
Time course 12hI-12hNI	1.06992	0.818
Time course 36hI-36hNI	0.77823	0.076
Time course 60hI-60hNI	0.47455	0.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	11.3832	0.273
transgenic ySAMdc/azygous control (breaker)	1.09684	1
transgenic ySAMdc/azygous control (red)	0.98711	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.01761	0.372

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.95268	0.431

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.95554	1
Manapal/WT (break)	0.81131	1
Manapal/WT (red)	1.23955	0.413