Expression of 1-1-6.1.12.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.032250.932
27DAP/17DAP1.263820.742
39DAP/27DAP0.888810.529
41DAP/39DAP1.225050.349
42DAP/41DAP1.036690.978
43DAP/42DAP1.061381
47DAP/43DAP1.263670.293
52DAP/47DAP1.03410.984
57DAP/52DAP1.040190.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.294970.008
17DAP/reference1.186610.014
27DAP/reference1.087310.152
39DAP/reference1.040560.557
41DAP/reference1.129990.054
42DAP/reference1.164250.026
43DAP/reference1.114840.445
47DAP/reference1.147190.022
52DAP/reference1.304950.025
57DAP/reference0.962330.395

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.888630.629
27DAP/17DAP0.860120.748
39DAP/27DAP1.3190.548
41DAP/39DAP1.76741
42DAP/41DAP1.475720.514
43DAP/42DAP1.13107
47DAP/43DAP1.133520.948
52DAP/47DAP1.000510.975
57DAP/52DAP0.666080.173
57DAP/7DAP1.030791

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.978870.613
17DAP/reference0.924910.013
27DAP/reference0.943370.033
39DAP/reference1.004771
41DAP/reference1.013711
42DAP/reference0.957470.13
43DAP/reference0.964570.368
47DAP/reference1.01081
52DAP/reference1.009730.886
57DAP/reference0.940640.043

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.40510.049
17DAP/reference1.465920.013
27DAP/reference1.32440.024
39DAP/reference1.544770.015
41DAP/reference1.45740.01
42DAP/reference1.214930.202
43DAP/reference1.573450.016
47DAP/reference1.259590.009
52DAP/reference1.597450.006
57DAP/reference1.640870.008

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.100260.723
17DAP/reference1.151290.427
27DAP/reference0.907890.049
39DAP/reference1.048050.578
41DAP/reference0.977530.264
42DAP/reference1.086510.635
43DAP/reference0.973540.523
47DAP/reference1.218420.196
52DAP/reference0.970960.65
57DAP/reference0.811490.118

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.870811
26DAP/20DAP0.65253
34DAP/26DAP1.72375
51DAP/34DAP1.406260.829
52DAP/51DAP0.94154
53DAP/52DAP1.233940.319
55DAP/53DAP1.302820.244
57DAP/55DAP2.155420.407
62DAP/57DAP1.212960.8
68DAP/62DAP0.657450.345
68DAP/14DAP0.82941

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.740560.341

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.57071
Mature Green Tomato/Ripe Tomato1.082920.752
Immature Eggplant/Mature Eggplant0.85890.493
Ripe Pepper/Ripe Tomato1.461991
Mature Eggplant/Ripe Tomato1.06304

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.002261
1-1-2/M820.968111
12-2/M821.185031
12-4/M820.936780.619
1-3/M820.872870.501
2-1-1/M821.132580.457
2-1/M821.370931
2-6/M821.058031
3-2/M821.054280.402
4-1-1/M821.105851
4-1/M820.988981
4-3-2/M820.965391
4-3/M821.011411
5-3/M821.013160.496
6-2/M821.005311
6-3/M820.986451
7-1/M821.034490.925
7-2/M820.996171
9-3-2/M820.863720.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.023271
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.008021
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.175320.673
IL1-4/WTpooled0.844550.562
WT/WTpooled1.101581

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.931881
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.101031
DC3000/delta hrp 24h0.879020.354

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.985831
Var 0h4.745970.936
Var 12h I row2-row10.820410.565
Var 12h NI row2-row10.489980.546
Var 36h I row2-row11.055211
Var 36h NI row2-row11.465391
Var 60h I row2-row11.203781
Var 60h NI row2-row11.219541
Time course 0hI-0hNI1.063121
Time course 12hI-12hNI1.017840.868
Time course 36hI-36hNI0.870420.15
Time course 60hI-60hNI0.940330.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.790720.362
transgenic ySAMdc/azygous control (breaker)0.988641
transgenic ySAMdc/azygous control (red)1.098270.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.914870.146

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.222451

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.697860.086
Manapal/WT (break)1.064851
Manapal/WT (red)0.913240.315