Expression of 1-1-6.1.12.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03225 | 0.932 |
27DAP/17DAP | 1.26382 | 0.742 |
39DAP/27DAP | 0.88881 | 0.529 |
41DAP/39DAP | 1.22505 | 0.349 |
42DAP/41DAP | 1.03669 | 0.978 |
43DAP/42DAP | 1.06138 | 1 |
47DAP/43DAP | 1.26367 | 0.293 |
52DAP/47DAP | 1.0341 | 0.984 |
57DAP/52DAP | 1.04019 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.29497 | 0.008 |
17DAP/reference | 1.18661 | 0.014 |
27DAP/reference | 1.08731 | 0.152 |
39DAP/reference | 1.04056 | 0.557 |
41DAP/reference | 1.12999 | 0.054 |
42DAP/reference | 1.16425 | 0.026 |
43DAP/reference | 1.11484 | 0.445 |
47DAP/reference | 1.14719 | 0.022 |
52DAP/reference | 1.30495 | 0.025 |
57DAP/reference | 0.96233 | 0.395 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88863 | 0.629 |
27DAP/17DAP | 0.86012 | 0.748 |
39DAP/27DAP | 1.319 | 0.548 |
41DAP/39DAP | 1.76741 | |
42DAP/41DAP | 1.47572 | 0.514 |
43DAP/42DAP | 1.13107 | |
47DAP/43DAP | 1.13352 | 0.948 |
52DAP/47DAP | 1.00051 | 0.975 |
57DAP/52DAP | 0.66608 | 0.173 |
57DAP/7DAP | 1.03079 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97887 | 0.613 |
17DAP/reference | 0.92491 | 0.013 |
27DAP/reference | 0.94337 | 0.033 |
39DAP/reference | 1.00477 | 1 |
41DAP/reference | 1.01371 | 1 |
42DAP/reference | 0.95747 | 0.13 |
43DAP/reference | 0.96457 | 0.368 |
47DAP/reference | 1.0108 | 1 |
52DAP/reference | 1.00973 | 0.886 |
57DAP/reference | 0.94064 | 0.043 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.4051 | 0.049 |
17DAP/reference | 1.46592 | 0.013 |
27DAP/reference | 1.3244 | 0.024 |
39DAP/reference | 1.54477 | 0.015 |
41DAP/reference | 1.4574 | 0.01 |
42DAP/reference | 1.21493 | 0.202 |
43DAP/reference | 1.57345 | 0.016 |
47DAP/reference | 1.25959 | 0.009 |
52DAP/reference | 1.59745 | 0.006 |
57DAP/reference | 1.64087 | 0.008 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10026 | 0.723 |
17DAP/reference | 1.15129 | 0.427 |
27DAP/reference | 0.90789 | 0.049 |
39DAP/reference | 1.04805 | 0.578 |
41DAP/reference | 0.97753 | 0.264 |
42DAP/reference | 1.08651 | 0.635 |
43DAP/reference | 0.97354 | 0.523 |
47DAP/reference | 1.21842 | 0.196 |
52DAP/reference | 0.97096 | 0.65 |
57DAP/reference | 0.81149 | 0.118 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.87081 | 1 |
26DAP/20DAP | 0.65253 | |
34DAP/26DAP | 1.72375 | |
51DAP/34DAP | 1.40626 | 0.829 |
52DAP/51DAP | 0.94154 | |
53DAP/52DAP | 1.23394 | 0.319 |
55DAP/53DAP | 1.30282 | 0.244 |
57DAP/55DAP | 2.15542 | 0.407 |
62DAP/57DAP | 1.21296 | 0.8 |
68DAP/62DAP | 0.65745 | 0.345 |
68DAP/14DAP | 0.8294 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.74056 | 0.341 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.57071 | |
Mature Green Tomato/Ripe Tomato | 1.08292 | 0.752 |
Immature Eggplant/Mature Eggplant | 0.8589 | 0.493 |
Ripe Pepper/Ripe Tomato | 1.46199 | 1 |
Mature Eggplant/Ripe Tomato | 1.06304 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00226 | 1 |
1-1-2/M82 | 0.96811 | 1 |
12-2/M82 | 1.18503 | 1 |
12-4/M82 | 0.93678 | 0.619 |
1-3/M82 | 0.87287 | 0.501 |
2-1-1/M82 | 1.13258 | 0.457 |
2-1/M82 | 1.37093 | 1 |
2-6/M82 | 1.05803 | 1 |
3-2/M82 | 1.05428 | 0.402 |
4-1-1/M82 | 1.10585 | 1 |
4-1/M82 | 0.98898 | 1 |
4-3-2/M82 | 0.96539 | 1 |
4-3/M82 | 1.01141 | 1 |
5-3/M82 | 1.01316 | 0.496 |
6-2/M82 | 1.00531 | 1 |
6-3/M82 | 0.98645 | 1 |
7-1/M82 | 1.03449 | 0.925 |
7-2/M82 | 0.99617 | 1 |
9-3-2/M82 | 0.86372 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.02327 | 1 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.00802 | 1 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.17532 | 0.673 |
IL1-4/WTpooled | 0.84455 | 0.562 |
WT/WTpooled | 1.10158 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93188 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.10103 | 1 |
DC3000/delta hrp 24h | 0.87902 | 0.354 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98583 | 1 |
Var 0h | 4.74597 | 0.936 |
Var 12h I row2-row1 | 0.82041 | 0.565 |
Var 12h NI row2-row1 | 0.48998 | 0.546 |
Var 36h I row2-row1 | 1.05521 | 1 |
Var 36h NI row2-row1 | 1.46539 | 1 |
Var 60h I row2-row1 | 1.20378 | 1 |
Var 60h NI row2-row1 | 1.21954 | 1 |
Time course 0hI-0hNI | 1.06312 | 1 |
Time course 12hI-12hNI | 1.01784 | 0.868 |
Time course 36hI-36hNI | 0.87042 | 0.15 |
Time course 60hI-60hNI | 0.94033 | 0.646 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.79072 | 0.362 |
transgenic ySAMdc/azygous control (breaker) | 0.98864 | 1 |
transgenic ySAMdc/azygous control (red) | 1.09827 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.91487 | 0.146 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.22245 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.69786 | 0.086 |
Manapal/WT (break) | 1.06485 | 1 |
Manapal/WT (red) | 0.91324 | 0.315 |
|
|