Expression of 1-1-6.1.12.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.114270.534
27DAP/17DAP1.198780.872
39DAP/27DAP1.06130.857
41DAP/39DAP1.15440.735
42DAP/41DAP1.101750.933
43DAP/42DAP1.122470.835
47DAP/43DAP1.002691
52DAP/47DAP1.21260.538
57DAP/52DAP0.950590.882

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.008490.928
17DAP/reference0.950220.18
27DAP/reference0.94910.147
39DAP/reference0.977620.663
41DAP/reference0.947690.341
42DAP/reference0.953950.034
43DAP/reference0.985380.653
47DAP/reference0.975810.242
52DAP/reference0.984950.546
57DAP/reference0.983630.526

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.972470.679
27DAP/17DAP0.932180.648
39DAP/27DAP1.041980.663
41DAP/39DAP1.063880.79
42DAP/41DAP0.956090.625
43DAP/42DAP0.942570.336
47DAP/43DAP1.008260.948
52DAP/47DAP1.028150.883
57DAP/52DAP1.036580.772
57DAP/7DAP1.100091

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.80515
17DAP/reference0.936060.056
27DAP/reference1.015680.664
39DAP/reference0.99030.64
41DAP/reference0.935380.111
42DAP/reference0.9230.01
43DAP/reference0.862590.023
47DAP/reference0.840980.044
52DAP/reference0.853720.072
57DAP/reference0.937520.156

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.014080.741
17DAP/reference1.00521
27DAP/reference0.92480.203
39DAP/reference0.956450.159
41DAP/reference0.990540.557
42DAP/reference1.009131
43DAP/reference0.992910.774
47DAP/reference0.974830.277
52DAP/reference0.968150.121
57DAP/reference0.97890.581

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.012291
17DAP/reference0.958870.426
27DAP/reference0.972690.442
39DAP/reference0.932130.246
41DAP/reference0.978740.459
42DAP/reference1.008210.961
43DAP/reference0.948590.348
47DAP/reference0.936880.306
52DAP/reference0.966870.596
57DAP/reference0.900950.07

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.992651
26DAP/20DAP1.014171
34DAP/26DAP0.954520.712
51DAP/34DAP1.090990.597
52DAP/51DAP1.046380.588
53DAP/52DAP0.988630.951
55DAP/53DAP1.01330.989
57DAP/55DAP1.030030.975
62DAP/57DAP0.989060.994
68DAP/62DAP0.905720.641
68DAP/14DAP0.989891

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.050141

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.00357
Mature Green Tomato/Ripe Tomato1.228590.632
Immature Eggplant/Mature Eggplant1.005971
Ripe Pepper/Ripe Tomato1.88074
Mature Eggplant/Ripe Tomato6.75124

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.897290.944
1-1-2/M820.66015
12-2/M821.098321
12-4/M820.903771
1-3/M820.78350.378
2-1-1/M82N/AN/A
2-1/M821.09041
2-6/M821.053810.594
3-2/M820.87182
4-1-1/M820.934911
4-1/M820.78441
4-3-2/M82N/AN/A
4-3/M820.66449
5-3/M821.011881
6-2/M821.10254
6-3/M82N/AN/A
7-1/M821.075831
7-2/M820.818240.565
9-3-2/M820.99298

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.030021
IL7-5/WTpooled1.27001
IL7-3/WTpooled1.162091
IL12-4/WTpooled0.944431
IL1-4/WTpooled1.00385
WT/WTpooled0.945571

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.028211

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.000241
DC3000/delta hrp 6h0.763210.95
DC3000/delta hrp 12h0.966781
DC3000/delta hrp 24h1.101190.422

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.019290.515
DC3000 delta B/DC3000 delta AB1.01870.655

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.239351
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.001581
Var 0h1.017281
Var 12h I row2-row11.11790.296
Var 12h NI row2-row11.070831
Var 36h I row2-row10.993641
Var 36h NI row2-row10.944370.743
Var 60h I row2-row11.148131
Var 60h NI row2-row10.973981
Time course 0hI-0hNI1.066390.852
Time course 12hI-12hNI1.051280.774
Time course 36hI-36hNI1.054710.453
Time course 60hI-60hNI1.130270.08

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)4.173830.166
transgenic ySAMdc/azygous control (red)1.479260.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.002010.958

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.015971

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.927841
Manapal/WT (red)N/AN/A