Expression of 1-1-6.1.13.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.177420.414
27DAP/17DAP0.82070.462
39DAP/27DAP1.280580.429
41DAP/39DAP0.899650.582
42DAP/41DAP0.924761
43DAP/42DAP0.918050.834
47DAP/43DAP1.154870.668
52DAP/47DAP1.02890.993
57DAP/52DAP1.196570.948

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.003940.824
17DAP/reference0.941350.208
27DAP/reference1.018950.831
39DAP/reference1.279480.047
41DAP/reference1.209450.145
42DAP/reference0.947570.124
43DAP/reference1.116150.36
47DAP/reference1.289110.004
52DAP/reference1.051310.695
57DAP/reference1.287890.019

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.977830.716
27DAP/17DAP1.080320.771
39DAP/27DAP0.805850.176
41DAP/39DAP1.185830.355
42DAP/41DAP0.952420.595
43DAP/42DAP1.026740.788
47DAP/43DAP0.966560.87
52DAP/47DAP1.182410.66
57DAP/52DAP1.259170.24
57DAP/7DAP1.49921

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.092540.268
17DAP/reference0.942930.192
27DAP/reference1.04830.551
39DAP/reference0.918130.073
41DAP/reference0.899840.111
42DAP/reference0.923330.235
43DAP/reference0.885370.056
47DAP/reference1.235690.079
52DAP/reference0.892790.053
57DAP/reference0.984790.549

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.066670.823
17DAP/reference1.069110.348
27DAP/reference1.261930.048
39DAP/reference0.995170.621
41DAP/reference0.986330.531
42DAP/reference1.172710.24
43DAP/reference1.139680.279
47DAP/reference1.421640.008
52DAP/reference0.987410.576
57DAP/reference0.854730.024

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.956120.422
17DAP/reference0.983470.709
27DAP/reference0.739510.031
39DAP/reference0.814170.018
41DAP/reference0.717330.019
42DAP/reference0.918360.134
43DAP/reference0.815970.052
47DAP/reference1.153030.562
52DAP/reference0.906030.36
57DAP/reference1.066780.867

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.860560.981
26DAP/20DAP1.614750.172
34DAP/26DAP0.912160.777
51DAP/34DAP1.219480.565
52DAP/51DAP1.152780.446
53DAP/52DAP1.111890.594
55DAP/53DAP0.794370.08
57DAP/55DAP1.003430.938
62DAP/57DAP1.183870.115
68DAP/62DAP1.309830.272
68DAP/14DAP0.927311

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.681150.032

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.300470.058
Mature Green Tomato/Ripe Tomato1.122210.185
Immature Eggplant/Mature Eggplant0.884840.493
Ripe Pepper/Ripe Tomato0.389520.224
Mature Eggplant/Ripe Tomato0.467790.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.885670.907
1-1-2/M821.092891
12-2/M820.743080.4
12-4/M821.017531
1-3/M821.215380.277
2-1-1/M821.126730.764
2-1/M821.207381
2-6/M821.041130.695
3-2/M821.088810.84
4-1-1/M821.339621
4-1/M821.688170.444
4-3-2/M821.108221
4-3/M821.383931
5-3/M820.976711
6-2/M820.970461
6-3/M820.986451
7-1/M821.114170.992
7-2/M820.956940.881
9-3-2/M821.111621

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.932551
IL2-6/WTpooled1.038761
IL7-5/WTpooled0.8447
IL7-3/WTpooled1.362981
IL12-4/WTpooled1.774290.516
IL1-4/WTpooled0.96440.834
WT/WTpooled1.024311

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.996271

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.878461
DC3000/delta hrp 6h0.905440.95
DC3000/delta hrp 12h0.96691
DC3000/delta hrp 24h1.114950.422

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.009951
DC3000 delta B/DC3000 delta AB0.894420.337

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.146941
Exp 36h1.357140.693
Exp 60h1.094181

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.997031
Var 0h1.166310.936
Var 12h I row2-row10.984761
Var 12h NI row2-row11.083751
Var 36h I row2-row11.166140.339
Var 36h NI row2-row10.838460.469
Var 60h I row2-row10.965520.582
Var 60h NI row2-row10.880760.483
Time course 0hI-0hNI1.107090.719
Time course 12hI-12hNI1.041890.779
Time course 36hI-36hNI1.372350.005
Time course 60hI-60hNI1.631190.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.986840.862
transgenic ySAMdc/azygous control (breaker)0.817560.49
transgenic ySAMdc/azygous control (red)0.860021

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.058140.142

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.687440.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.88431
Manapal/WT (break)0.938891
Manapal/WT (red)1.11311