Expression of 1-1-6.1.13.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17742 | 0.414 |
27DAP/17DAP | 0.8207 | 0.462 |
39DAP/27DAP | 1.28058 | 0.429 |
41DAP/39DAP | 0.89965 | 0.582 |
42DAP/41DAP | 0.92476 | 1 |
43DAP/42DAP | 0.91805 | 0.834 |
47DAP/43DAP | 1.15487 | 0.668 |
52DAP/47DAP | 1.0289 | 0.993 |
57DAP/52DAP | 1.19657 | 0.948 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00394 | 0.824 |
17DAP/reference | 0.94135 | 0.208 |
27DAP/reference | 1.01895 | 0.831 |
39DAP/reference | 1.27948 | 0.047 |
41DAP/reference | 1.20945 | 0.145 |
42DAP/reference | 0.94757 | 0.124 |
43DAP/reference | 1.11615 | 0.36 |
47DAP/reference | 1.28911 | 0.004 |
52DAP/reference | 1.05131 | 0.695 |
57DAP/reference | 1.28789 | 0.019 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97783 | 0.716 |
27DAP/17DAP | 1.08032 | 0.771 |
39DAP/27DAP | 0.80585 | 0.176 |
41DAP/39DAP | 1.18583 | 0.355 |
42DAP/41DAP | 0.95242 | 0.595 |
43DAP/42DAP | 1.02674 | 0.788 |
47DAP/43DAP | 0.96656 | 0.87 |
52DAP/47DAP | 1.18241 | 0.66 |
57DAP/52DAP | 1.25917 | 0.24 |
57DAP/7DAP | 1.4992 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09254 | 0.268 |
17DAP/reference | 0.94293 | 0.192 |
27DAP/reference | 1.0483 | 0.551 |
39DAP/reference | 0.91813 | 0.073 |
41DAP/reference | 0.89984 | 0.111 |
42DAP/reference | 0.92333 | 0.235 |
43DAP/reference | 0.88537 | 0.056 |
47DAP/reference | 1.23569 | 0.079 |
52DAP/reference | 0.89279 | 0.053 |
57DAP/reference | 0.98479 | 0.549 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06667 | 0.823 |
17DAP/reference | 1.06911 | 0.348 |
27DAP/reference | 1.26193 | 0.048 |
39DAP/reference | 0.99517 | 0.621 |
41DAP/reference | 0.98633 | 0.531 |
42DAP/reference | 1.17271 | 0.24 |
43DAP/reference | 1.13968 | 0.279 |
47DAP/reference | 1.42164 | 0.008 |
52DAP/reference | 0.98741 | 0.576 |
57DAP/reference | 0.85473 | 0.024 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95612 | 0.422 |
17DAP/reference | 0.98347 | 0.709 |
27DAP/reference | 0.73951 | 0.031 |
39DAP/reference | 0.81417 | 0.018 |
41DAP/reference | 0.71733 | 0.019 |
42DAP/reference | 0.91836 | 0.134 |
43DAP/reference | 0.81597 | 0.052 |
47DAP/reference | 1.15303 | 0.562 |
52DAP/reference | 0.90603 | 0.36 |
57DAP/reference | 1.06678 | 0.867 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.86056 | 0.981 |
26DAP/20DAP | 1.61475 | 0.172 |
34DAP/26DAP | 0.91216 | 0.777 |
51DAP/34DAP | 1.21948 | 0.565 |
52DAP/51DAP | 1.15278 | 0.446 |
53DAP/52DAP | 1.11189 | 0.594 |
55DAP/53DAP | 0.79437 | 0.08 |
57DAP/55DAP | 1.00343 | 0.938 |
62DAP/57DAP | 1.18387 | 0.115 |
68DAP/62DAP | 1.30983 | 0.272 |
68DAP/14DAP | 0.92731 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.68115 | 0.032 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.30047 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.12221 | 0.185 |
Immature Eggplant/Mature Eggplant | 0.88484 | 0.493 |
Ripe Pepper/Ripe Tomato | 0.38952 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.46779 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.88567 | 0.907 |
1-1-2/M82 | 1.09289 | 1 |
12-2/M82 | 0.74308 | 0.4 |
12-4/M82 | 1.01753 | 1 |
1-3/M82 | 1.21538 | 0.277 |
2-1-1/M82 | 1.12673 | 0.764 |
2-1/M82 | 1.20738 | 1 |
2-6/M82 | 1.04113 | 0.695 |
3-2/M82 | 1.08881 | 0.84 |
4-1-1/M82 | 1.33962 | 1 |
4-1/M82 | 1.68817 | 0.444 |
4-3-2/M82 | 1.10822 | 1 |
4-3/M82 | 1.38393 | 1 |
5-3/M82 | 0.97671 | 1 |
6-2/M82 | 0.97046 | 1 |
6-3/M82 | 0.98645 | 1 |
7-1/M82 | 1.11417 | 0.992 |
7-2/M82 | 0.95694 | 0.881 |
9-3-2/M82 | 1.11162 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.93255 | 1 |
IL2-6/WTpooled | 1.03876 | 1 |
IL7-5/WTpooled | 0.8447 | |
IL7-3/WTpooled | 1.36298 | 1 |
IL12-4/WTpooled | 1.77429 | 0.516 |
IL1-4/WTpooled | 0.9644 | 0.834 |
WT/WTpooled | 1.02431 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.99627 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.87846 | 1 |
DC3000/delta hrp 6h | 0.90544 | 0.95 |
DC3000/delta hrp 12h | 0.9669 | 1 |
DC3000/delta hrp 24h | 1.11495 | 0.422 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.00995 | 1 |
DC3000 delta B/DC3000 delta AB | 0.89442 | 0.337 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.14694 | 1 |
Exp 36h | 1.35714 | 0.693 |
Exp 60h | 1.09418 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99703 | 1 |
Var 0h | 1.16631 | 0.936 |
Var 12h I row2-row1 | 0.98476 | 1 |
Var 12h NI row2-row1 | 1.08375 | 1 |
Var 36h I row2-row1 | 1.16614 | 0.339 |
Var 36h NI row2-row1 | 0.83846 | 0.469 |
Var 60h I row2-row1 | 0.96552 | 0.582 |
Var 60h NI row2-row1 | 0.88076 | 0.483 |
Time course 0hI-0hNI | 1.10709 | 0.719 |
Time course 12hI-12hNI | 1.04189 | 0.779 |
Time course 36hI-36hNI | 1.37235 | 0.005 |
Time course 60hI-60hNI | 1.63119 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98684 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 0.81756 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.86002 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05814 | 0.142 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.68744 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.8843 | 1 |
Manapal/WT (break) | 0.93889 | 1 |
Manapal/WT (red) | 1.1131 | 1 |
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