Expression of 1-1-6.1.14.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.75450.141
27DAP/17DAP1.208611
39DAP/27DAP1.341990.217
41DAP/39DAP0.887820.416
42DAP/41DAP0.892571
43DAP/42DAP0.920750.865
47DAP/43DAP0.604220.08
52DAP/47DAP1.109880.915
57DAP/52DAP1.266110.82

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.803130.027
17DAP/reference0.985670.536
27DAP/reference0.60790.012
39DAP/reference0.687330.051
41DAP/reference0.713490.039
42DAP/reference1.174820.01
43DAP/reference0.728640.056
47DAP/reference0.774850.001
52DAP/reference0.489630.013
57DAP/reference0.624540.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.82660.064
27DAP/17DAP1.057260.826
39DAP/27DAP0.818180.047
41DAP/39DAP1.283761
42DAP/41DAP1.051661
43DAP/42DAP0.899340.06
47DAP/43DAP0.960060.774
52DAP/47DAP0.56240.042
57DAP/52DAP0.75560.194
57DAP/7DAP0.345731

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.809980.024
17DAP/reference2.090950.006
27DAP/reference1.661890.006
39DAP/reference1.165170.04
41DAP/reference1.450820.03
42DAP/reference1.282720.046
43DAP/reference1.222380.118
47DAP/reference1.224910.292
52DAP/reference1.186640.308
57DAP/reference1.026910.775

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.405770.108
17DAP/reference1.626320.007
27DAP/reference1.644830.031
39DAP/reference0.94580.37
41DAP/reference1.355530.014
42DAP/reference1.499360.038
43DAP/reference1.121980.736
47DAP/reference1.113040.413
52DAP/reference0.588080.004
57DAP/reference0.656450.011

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.082670.518
17DAP/reference1.533860.212
27DAP/reference1.646350.021
39DAP/reference1.667880.01
41DAP/reference1.241150.021
42DAP/reference1.256330.05
43DAP/reference1.522110.031
47DAP/reference0.502460.004
52DAP/reference1.006810.854
57DAP/reference1.083341

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.178381
26DAP/20DAP4.915890.097
34DAP/26DAP0.704080.164
51DAP/34DAP0.916210.305
52DAP/51DAP0.817250.151
53DAP/52DAP1.050761
55DAP/53DAP0.78470.039
57DAP/55DAP0.837570.313
62DAP/57DAP1.155610.833
68DAP/62DAP0.950110.787
68DAP/14DAP0.706881

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker4.56220.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.9590.658
Mature Green Tomato/Ripe Tomato1.866110.015
Immature Eggplant/Mature Eggplant0.93280.223
Ripe Pepper/Ripe Tomato1.346760.258
Mature Eggplant/Ripe Tomato1.455640.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.028261
1-1-2/M821.277491
12-2/M820.755480.955
12-4/M821.156761
1-3/M821.134060.479
2-1-1/M820.933680.784
2-1/M821.0891
2-6/M821.172470.594
3-2/M820.918971
4-1-1/M821.514121
4-1/M821.203091
4-3-2/M821.831460.246
4-3/M821.439061
5-3/M821.080691
6-2/M821.447371
6-3/M820.966311
7-1/M821.054271
7-2/M821.124791
9-3-2/M821.498861

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.961250.321
IL2-6/WTpooled0.814380.348
IL7-5/WTpooled1.144290.722
IL7-3/WTpooled1.468310.362
IL12-4/WTpooled1.168370.532
IL1-4/WTpooled1.029781
WT/WTpooled1.071371

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.179371

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.991351
DC3000/delta hrp 6h0.956430.95
DC3000/delta hrp 12h1.244841
DC3000/delta hrp 24h1.070680.264

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.199770.048
DC3000 delta B/DC3000 delta AB1.362870.118

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.234391
Exp 36h1.164751
Exp 60h1.378080.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.003921
Var 0h1.080010.311
Var 12h I row2-row10.877120.338
Var 12h NI row2-row11.107861
Var 36h I row2-row11.194760.489
Var 36h NI row2-row10.879530.549
Var 60h I row2-row10.817730.374
Var 60h NI row2-row10.829850.69
Time course 0hI-0hNI1.066820.603
Time course 12hI-12hNI1.022180.811
Time course 36hI-36hNI1.358770.007
Time course 60hI-60hNI1.786020.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.052260.699
transgenic ySAMdc/azygous control (breaker)0.93260.251
transgenic ySAMdc/azygous control (red)1.171620.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.244680.163

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.95990.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.100750.14
Manapal/WT (break)1.090990.381
Manapal/WT (red)0.890640.181