Expression of 1-1-6.1.14.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.886840.503
27DAP/17DAP1.128330.89
39DAP/27DAP1.38960.201
41DAP/39DAP1.608420.339
42DAP/41DAP1.387451
43DAP/42DAP0.862080.671
47DAP/43DAP0.807410.416
52DAP/47DAP1.280680.637
57DAP/52DAP0.970010.952

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.191750.241
17DAP/reference0.892960.24
27DAP/reference0.827660.369
39DAP/reference1.084130.639
41DAP/reference0.904450.341
42DAP/reference1.027130.665
43DAP/reference0.834160.163
47DAP/reference1.064651
52DAP/reference0.998350.654
57DAP/reference1.081550.564

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.211980.29
27DAP/17DAP0.998490.969
39DAP/27DAP1.243050.441
41DAP/39DAP1.340010.355
42DAP/41DAP0.814360.296
43DAP/42DAP1.598290.034
47DAP/43DAP1.320020.073
52DAP/47DAP0.80130.161
57DAP/52DAP1.169430.828
57DAP/7DAP1.290520.204

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.688020.025
17DAP/reference1.498240.006
27DAP/reference1.351630.008
39DAP/reference1.30730.048
41DAP/reference1.029430.977
42DAP/reference1.074970.889
43DAP/reference1.012610.802
47DAP/reference1.090080.582
52DAP/reference1.259620.071
57DAP/reference1.234440.035

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.162340.812
17DAP/reference1.01461
27DAP/reference1.212540.203
39DAP/reference1.022680.722
41DAP/reference1.021730.749
42DAP/reference0.741080.046
43DAP/reference0.994820.774
47DAP/reference1.046430.795
52DAP/reference1.098460.882
57DAP/reference1.174210.737

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.777530.015
17DAP/reference1.20270.595
27DAP/reference1.285960.044
39DAP/reference1.359730.029
41DAP/reference1.293810.009
42DAP/reference1.297930.082
43DAP/reference1.287140.092
47DAP/reference0.708640.033
52DAP/reference1.336650.1
57DAP/reference1.306180.16

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.076240.966
26DAP/20DAP0.834230.244
34DAP/26DAP0.877640.653
51DAP/34DAP0.8290.508
52DAP/51DAP1.333240.396
53DAP/52DAP0.55250.068
55DAP/53DAP1.163420.848
57DAP/55DAP0.790120.194
62DAP/57DAP0.935920.871
68DAP/62DAP2.9840.747
68DAP/14DAP0.656790.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.875320.322

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.857390.364
Mature Green Tomato/Ripe Tomato0.396520.066
Immature Eggplant/Mature Eggplant0.841160.144
Ripe Pepper/Ripe Tomato3.27122
Mature Eggplant/Ripe Tomato1.967590.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.97877
1-1-2/M821.01285
12-2/M82N/AN/A
12-4/M820.941611
1-3/M820.60654
2-1-1/M821.519750.764
2-1/M82N/AN/A
2-6/M820.89151
3-2/M820.85697
4-1-1/M82N/AN/A
4-1/M821.16169
4-3-2/M82N/AN/A
4-3/M820.73316
5-3/M820.966911
6-2/M82N/AN/A
6-3/M821.110831
7-1/M820.86285
7-2/M820.756640.881
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.156280.493
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.71173
IL7-3/WTpooled0.8909
IL12-4/WTpooled0.946091
IL1-4/WTpooled1.512221
WT/WTpooled1.013621

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.071691

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.001221
DC3000/delta hrp 6h1.385131
DC3000/delta hrp 12h1.341261
DC3000/delta hrp 24h1.020690.779

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h0.999951
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.936431
Var 0h0.979241
Var 12h I row2-row11.330140.406
Var 12h NI row2-row11.153130.649
Var 36h I row2-row10.577530.805
Var 36h NI row2-row11.143511
Var 60h I row2-row11.167230.562
Var 60h NI row2-row10.571920.818
Time course 0hI-0hNI0.873871
Time course 12hI-12hNI1.022530.854
Time course 36hI-36hNI1.054380.355
Time course 60hI-60hNI1.053431

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.304080.36
transgenic ySAMdc/azygous control (breaker)0.845720.49
transgenic ySAMdc/azygous control (red)0.867841

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.861810.038

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.521910.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.657160.096
Manapal/WT (break)0.78660.333
Manapal/WT (red)0.480210.184