Expression of 1-1-6.1.14.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.4230.77
27DAP/17DAP1.226460.799
39DAP/27DAP0.894410.549
41DAP/39DAP1.291710.642
42DAP/41DAP1.840450.03
43DAP/42DAP1.259130.831
47DAP/43DAP1.412790.364
52DAP/47DAP0.607990.134
57DAP/52DAP1.193590.958

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.400770.126
17DAP/reference1.194960.565
27DAP/reference1.190880.82
39DAP/reference1.206280.664
41DAP/reference0.869250.267
42DAP/reference3.288520.001
43DAP/reference1.06220.882
47DAP/reference2.195510.275
52DAP/reference1.231390.73
57DAP/reference0.903290.248

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.287070.038
27DAP/17DAP0.979070.887
39DAP/27DAP0.894440.456
41DAP/39DAP1.054670.88
42DAP/41DAP0.949350.529
43DAP/42DAP0.890860.189
47DAP/43DAP0.981750.886
52DAP/47DAP1.146360.619
57DAP/52DAP1.108310.657
57DAP/7DAP1.041431

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference3.729410.024
17DAP/reference1.61150.014
27DAP/reference2.327290.006
39DAP/reference1.890260.024
41DAP/reference1.89180.019
42DAP/reference2.371360.021
43DAP/reference2.335940.007
47DAP/reference2.837950.017
52DAP/reference17.77740.007
57DAP/reference11.26990.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.287840.102
17DAP/reference2.166860.007
27DAP/reference1.763470.022
39DAP/reference1.761010.014
41DAP/reference1.728150.005
42DAP/reference1.88470.009
43DAP/reference1.07230.516
47DAP/reference1.362780.026
52DAP/reference1.92710.006
57DAP/reference1.684840.193

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference5.036660.015
17DAP/reference0.908420.308
27DAP/reference1.429450.038
39DAP/reference3.527240.004
41DAP/reference4.172550.006
42DAP/reference2.83450.006
43DAP/reference2.648520.008
47DAP/reference1.895590.005
52DAP/reference2.766950.03
57DAP/reference2.646360.015

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.80450.997
26DAP/20DAP1.355860.153
34DAP/26DAP0.903410.472
51DAP/34DAP1.047420.98
52DAP/51DAP0.829171
53DAP/52DAP0.896260.621
55DAP/53DAP0.780590.159
57DAP/55DAP1.121370.826
62DAP/57DAP0.931310.871
68DAP/62DAP0.765850.769
68DAP/14DAP2.89609

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.070970.018

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.953320.063
Mature Green Tomato/Ripe Tomato0.823330.148
Immature Eggplant/Mature Eggplant0.913580.594
Ripe Pepper/Ripe Tomato0.615770.224
Mature Eggplant/Ripe Tomato2.140231

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.72512
12-2/M82N/AN/A
12-4/M821.308481
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.07579
4-1-1/M82N/AN/A
4-1/M821.59895
4-3-2/M821.612770.241
4-3/M82N/AN/A
5-3/M821.208981
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.9326
7-2/M82N/AN/A
9-3-2/M821.630351

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.015741
IL2-6/WTpooled1.194470.584
IL7-5/WTpooled0.858631
IL7-3/WTpooled0.778070.418
IL12-4/WTpooled0.821190.554
IL1-4/WTpooled1.317581
WT/WTpooled1.043431

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.185750.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.783021
DC3000/delta hrp 6h1.08861
DC3000/delta hrp 12h1.435871
DC3000/delta hrp 24h1.007921

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.88360.691
DC3000 delta B/DC3000 delta AB1.171030.315

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.107521
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.001371
Var 0h1.077960.98
Var 12h I row2-row10.912840.705
Var 12h NI row2-row10.90430.906
Var 36h I row2-row11.07890.601
Var 36h NI row2-row10.889630.45
Var 60h I row2-row10.980780.832
Var 60h NI row2-row10.843260.458
Time course 0hI-0hNI1.035180.833
Time course 12hI-12hNI0.955030.668
Time course 36hI-36hNI1.07550.401
Time course 60hI-60hNI1.097640.187

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.208320.384
transgenic ySAMdc/azygous control (breaker)0.880290.251
transgenic ySAMdc/azygous control (red)1.242750.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.833850.047

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.328450.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.510220.172
Manapal/WT (break)1.158561
Manapal/WT (red)1.008861