Expression of 1-1-6.1.15.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.914580.532
27DAP/17DAP1.034430.994
39DAP/27DAP1.235680.493
41DAP/39DAP0.860080.561
42DAP/41DAP0.920331
43DAP/42DAP1.240750.595
47DAP/43DAP1.243270.278
52DAP/47DAP0.57980.051
57DAP/52DAP0.98730.982

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.040130.872
17DAP/reference0.97260.474
27DAP/reference0.979340.514
39DAP/reference1.007380.889
41DAP/reference1.103170.058
42DAP/reference1.056390.151
43DAP/reference1.003391
47DAP/reference1.02850.794
52DAP/reference0.969110.449
57DAP/reference0.953380.138

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.108330.642
27DAP/17DAP1.012880.943
39DAP/27DAP0.694840.093
41DAP/39DAP0.817560.434
42DAP/41DAP0.930390.635
43DAP/42DAP1.027420.788
47DAP/43DAP0.986460.939
52DAP/47DAP1.097360.756
57DAP/52DAP1.021670.852
57DAP/7DAP0.803611

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.822090.044
17DAP/reference0.906810.192
27DAP/reference1.109180.131
39DAP/reference1.065140.865
41DAP/reference1.109190.56
42DAP/reference0.854640.024
43DAP/reference0.967120.502
47DAP/reference0.881350.222
52DAP/reference0.947760.398
57DAP/reference0.91710.109

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.127290.39
17DAP/reference1.183810.037
27DAP/reference1.154250.163
39DAP/reference1.18860.054
41DAP/reference1.257750.118
42DAP/reference1.02281
43DAP/reference1.332740.152
47DAP/reference1.070750.264
52DAP/reference1.168390.017
57DAP/reference1.128710.146

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.039920.809
17DAP/reference1.00560.839
27DAP/reference1.059410.325
39DAP/reference0.960710.43
41DAP/reference1.131960.231
42DAP/reference1.085510.612
43DAP/reference1.075350.58
47DAP/reference1.059570.585
52DAP/reference0.891490.376
57DAP/reference1.146490.16

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.014790.966
26DAP/20DAP0.990141
34DAP/26DAP1.462850.304
51DAP/34DAP1.33430.785
52DAP/51DAP1.076070.606
53DAP/52DAP1.124260.935
55DAP/53DAP1.142890.656
57DAP/55DAP1.22650.881
62DAP/57DAP0.844670.28
68DAP/62DAP0.971090.81
68DAP/14DAP0.884560.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.606440.041

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.304820.417
Mature Green Tomato/Ripe Tomato1.157520.752
Immature Eggplant/Mature Eggplant1.229130.19
Ripe Pepper/Ripe Tomato0.913681
Mature Eggplant/Ripe Tomato1.078361

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.53367
1-1-2/M821.12203
12-2/M82N/AN/A
12-4/M821.00891
1-3/M82N/AN/A
2-1-1/M821.62639
2-1/M82N/AN/A
2-6/M820.987561
3-2/M821.01562
4-1-1/M82N/AN/A
4-1/M821.46142
4-3-2/M820.9133
4-3/M82N/AN/A
5-3/M820.956441
6-2/M821.00154
6-3/M821.111081
7-1/M820.93472
7-2/M820.842490.881
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.169720.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.057680.921
DC3000/delta hrp 6h1.098391
DC3000/delta hrp 12h1.004411
DC3000/delta hrp 24h0.982910.945

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.68696
DC3000 delta B/DC3000 delta AB0.856330.529

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.458421
Exp 36h1.093450.693
Exp 60h1.147540.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.987721
Var 0h1.129780.594
Var 12h I row2-row10.905390.39
Var 12h NI row2-row10.791910.394
Var 36h I row2-row10.900480.125
Var 36h NI row2-row11.305450.482
Var 60h I row2-row10.793770.832
Var 60h NI row2-row10.870870.977
Time course 0hI-0hNI1.033710.852
Time course 12hI-12hNI0.947040.618
Time course 36hI-36hNI0.781620.034
Time course 60hI-60hNI0.427690.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.080640.305
transgenic ySAMdc/azygous control (breaker)1.086350.178
transgenic ySAMdc/azygous control (red)1.00680.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.93560.055

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.942650.35

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.875561
Manapal/WT (break)0.920351
Manapal/WT (red)1.313240.222