Expression of 1-1-6.1.15.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91458 | 0.532 |
27DAP/17DAP | 1.03443 | 0.994 |
39DAP/27DAP | 1.23568 | 0.493 |
41DAP/39DAP | 0.86008 | 0.561 |
42DAP/41DAP | 0.92033 | 1 |
43DAP/42DAP | 1.24075 | 0.595 |
47DAP/43DAP | 1.24327 | 0.278 |
52DAP/47DAP | 0.5798 | 0.051 |
57DAP/52DAP | 0.9873 | 0.982 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04013 | 0.872 |
17DAP/reference | 0.9726 | 0.474 |
27DAP/reference | 0.97934 | 0.514 |
39DAP/reference | 1.00738 | 0.889 |
41DAP/reference | 1.10317 | 0.058 |
42DAP/reference | 1.05639 | 0.151 |
43DAP/reference | 1.00339 | 1 |
47DAP/reference | 1.0285 | 0.794 |
52DAP/reference | 0.96911 | 0.449 |
57DAP/reference | 0.95338 | 0.138 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10833 | 0.642 |
27DAP/17DAP | 1.01288 | 0.943 |
39DAP/27DAP | 0.69484 | 0.093 |
41DAP/39DAP | 0.81756 | 0.434 |
42DAP/41DAP | 0.93039 | 0.635 |
43DAP/42DAP | 1.02742 | 0.788 |
47DAP/43DAP | 0.98646 | 0.939 |
52DAP/47DAP | 1.09736 | 0.756 |
57DAP/52DAP | 1.02167 | 0.852 |
57DAP/7DAP | 0.80361 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82209 | 0.044 |
17DAP/reference | 0.90681 | 0.192 |
27DAP/reference | 1.10918 | 0.131 |
39DAP/reference | 1.06514 | 0.865 |
41DAP/reference | 1.10919 | 0.56 |
42DAP/reference | 0.85464 | 0.024 |
43DAP/reference | 0.96712 | 0.502 |
47DAP/reference | 0.88135 | 0.222 |
52DAP/reference | 0.94776 | 0.398 |
57DAP/reference | 0.9171 | 0.109 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12729 | 0.39 |
17DAP/reference | 1.18381 | 0.037 |
27DAP/reference | 1.15425 | 0.163 |
39DAP/reference | 1.1886 | 0.054 |
41DAP/reference | 1.25775 | 0.118 |
42DAP/reference | 1.0228 | 1 |
43DAP/reference | 1.33274 | 0.152 |
47DAP/reference | 1.07075 | 0.264 |
52DAP/reference | 1.16839 | 0.017 |
57DAP/reference | 1.12871 | 0.146 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03992 | 0.809 |
17DAP/reference | 1.0056 | 0.839 |
27DAP/reference | 1.05941 | 0.325 |
39DAP/reference | 0.96071 | 0.43 |
41DAP/reference | 1.13196 | 0.231 |
42DAP/reference | 1.08551 | 0.612 |
43DAP/reference | 1.07535 | 0.58 |
47DAP/reference | 1.05957 | 0.585 |
52DAP/reference | 0.89149 | 0.376 |
57DAP/reference | 1.14649 | 0.16 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01479 | 0.966 |
26DAP/20DAP | 0.99014 | 1 |
34DAP/26DAP | 1.46285 | 0.304 |
51DAP/34DAP | 1.3343 | 0.785 |
52DAP/51DAP | 1.07607 | 0.606 |
53DAP/52DAP | 1.12426 | 0.935 |
55DAP/53DAP | 1.14289 | 0.656 |
57DAP/55DAP | 1.2265 | 0.881 |
62DAP/57DAP | 0.84467 | 0.28 |
68DAP/62DAP | 0.97109 | 0.81 |
68DAP/14DAP | 0.88456 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.60644 | 0.041 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.30482 | 0.417 |
Mature Green Tomato/Ripe Tomato | 1.15752 | 0.752 |
Immature Eggplant/Mature Eggplant | 1.22913 | 0.19 |
Ripe Pepper/Ripe Tomato | 0.91368 | 1 |
Mature Eggplant/Ripe Tomato | 1.07836 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.53367 | |
1-1-2/M82 | 1.12203 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.0089 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.62639 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.98756 | 1 |
3-2/M82 | 1.01562 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.46142 | |
4-3-2/M82 | 0.9133 | |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.95644 | 1 |
6-2/M82 | 1.00154 | |
6-3/M82 | 1.11108 | 1 |
7-1/M82 | 0.93472 | |
7-2/M82 | 0.84249 | 0.881 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.16972 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05768 | 0.921 |
DC3000/delta hrp 6h | 1.09839 | 1 |
DC3000/delta hrp 12h | 1.00441 | 1 |
DC3000/delta hrp 24h | 0.98291 | 0.945 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.68696 | |
DC3000 delta B/DC3000 delta AB | 0.85633 | 0.529 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.45842 | 1 |
Exp 36h | 1.09345 | 0.693 |
Exp 60h | 1.14754 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98772 | 1 |
Var 0h | 1.12978 | 0.594 |
Var 12h I row2-row1 | 0.90539 | 0.39 |
Var 12h NI row2-row1 | 0.79191 | 0.394 |
Var 36h I row2-row1 | 0.90048 | 0.125 |
Var 36h NI row2-row1 | 1.30545 | 0.482 |
Var 60h I row2-row1 | 0.79377 | 0.832 |
Var 60h NI row2-row1 | 0.87087 | 0.977 |
Time course 0hI-0hNI | 1.03371 | 0.852 |
Time course 12hI-12hNI | 0.94704 | 0.618 |
Time course 36hI-36hNI | 0.78162 | 0.034 |
Time course 60hI-60hNI | 0.42769 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.08064 | 0.305 |
transgenic ySAMdc/azygous control (breaker) | 1.08635 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.0068 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9356 | 0.055 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.94265 | 0.35 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.87556 | 1 |
Manapal/WT (break) | 0.92035 | 1 |
Manapal/WT (red) | 1.31324 | 0.222 |
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