Expression of 1-1-6.1.15.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.069990.812
27DAP/17DAP1.008431
39DAP/27DAP0.91880.573
41DAP/39DAP0.990260.949
42DAP/41DAP0.989651
43DAP/42DAP1.0080.937
47DAP/43DAP1.066460.702
52DAP/47DAP0.896160.694
57DAP/52DAP1.01380.996

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.823560.07
17DAP/reference1.018530.813
27DAP/reference1.035950.925
39DAP/reference1.112480.165
41DAP/reference0.941930.434
42DAP/reference1.35550.006
43DAP/reference1.255310.118
47DAP/reference1.456530.001
52DAP/reference1.548320.008
57DAP/reference1.643350.009

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.181670.067
27DAP/17DAP0.880340.169
39DAP/27DAP0.770410.041
41DAP/39DAP0.964190.934
42DAP/41DAP0.923670.434
43DAP/42DAP0.933650.351
47DAP/43DAP0.87340.239
52DAP/47DAP1.095290.703
57DAP/52DAP1.028491
57DAP/7DAP0.494590.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.122830.501
17DAP/reference0.948750.338
27DAP/reference0.941020.283
39DAP/reference1.053181
41DAP/reference1.03020.836
42DAP/reference1.10260.686
43DAP/reference0.985740.502
47DAP/reference1.334350.084
52DAP/reference1.160610.526
57DAP/reference0.829890.028

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.890030.329
17DAP/reference0.710390.008
27DAP/reference1.05730.86
39DAP/reference1.260.031
41DAP/reference1.175480.215
42DAP/reference1.250940.07
43DAP/reference0.871880.229
47DAP/reference1.273430.008
52DAP/reference0.979670.5
57DAP/reference0.886290.135

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.137830.041
17DAP/reference0.87780.144
27DAP/reference0.928310.302
39DAP/reference0.896410.122
41DAP/reference0.980450.618
42DAP/reference1.093380.529
43DAP/reference1.07020.91
47DAP/reference1.662730.009
52DAP/reference1.129450.714
57DAP/reference2.267460.017

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.998981
26DAP/20DAP0.750340.512
34DAP/26DAP1.171950.819
51DAP/34DAP0.901360.618
52DAP/51DAP1.290520.197
53DAP/52DAP0.872980.386
55DAP/53DAP1.189380.05
57DAP/55DAP1.159970.986
62DAP/57DAP1.55540.515
68DAP/62DAP5.062750.05
68DAP/14DAP3.420740.018

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.098950.558

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper30.37740.176
Mature Green Tomato/Ripe Tomato0.996520.835
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.07882
Mature Eggplant/Ripe Tomato0.083080.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.133560.742
1-1-2/M821.018951
12-2/M820.945140.955
12-4/M820.950861
1-3/M820.988321
2-1-1/M821.12220.422
2-1/M821.168650.345
2-6/M820.987371
3-2/M820.976661
4-1-1/M821.199881
4-1/M820.915761
4-3-2/M821.11451
4-3/M821.049121
5-3/M821.05190.572
6-2/M821.072281
6-3/M820.958361
7-1/M820.990361
7-2/M820.979291
9-3-2/M821.10787

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.386580.277
IL2-6/WTpooled0.843290.473
IL7-5/WTpooled1.580140.722
IL7-3/WTpooled0.9721
IL12-4/WTpooled1.074221
IL1-4/WTpooled1.171270.426
WT/WTpooled0.865621

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.935620.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.054920.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.221151
DC3000/delta hrp 24h1.050850.567

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.799010.034
DC3000 delta B/DC3000 delta AB0.754340.021

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h3.122511
Exp 36h4.013831
Exp 60h2.817751

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.997281
Var 0h1.031280.98
Var 12h I row2-row10.702920.338
Var 12h NI row2-row10.870220.466
Var 36h I row2-row10.921311
Var 36h NI row2-row11.331361
Var 60h I row2-row11.242750.487
Var 60h NI row2-row10.952321
Time course 0hI-0hNI0.954340.631
Time course 12hI-12hNI0.95910.6
Time course 36hI-36hNI0.835710.023
Time course 60hI-60hNI0.147210.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.175920.511
transgenic ySAMdc/azygous control (breaker)0.824410.49
transgenic ySAMdc/azygous control (red)1.30431

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.98350.383

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.266220.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.54820.307
Manapal/WT (break)1.440470.183
Manapal/WT (red)1.353250.413