Expression of 1-1-6.1.16.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.903620.503
27DAP/17DAP1.014230.992
39DAP/27DAP1.232490.466
41DAP/39DAP1.107350.722
42DAP/41DAP1.002641
43DAP/42DAP1.052711
47DAP/43DAP1.061380.965
52DAP/47DAP0.822420.543
57DAP/52DAP1.102320.964

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.844860.034
17DAP/reference0.957710.342
27DAP/reference0.947540.406
39DAP/reference0.975020.611
41DAP/reference0.83010.065
42DAP/reference0.915860.075
43DAP/reference0.959620.576
47DAP/reference0.937710.174
52DAP/reference1.000580.749
57DAP/reference1.095630.249

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.985460.697
27DAP/17DAP1.073930.912
39DAP/27DAP0.950720.737
41DAP/39DAP1.17090.727
42DAP/41DAP1.013051
43DAP/42DAP1.024810.699
47DAP/43DAP1.058620.844
52DAP/47DAP1.145610.639
57DAP/52DAP1.208090.497
57DAP/7DAP1.278191

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.006291
17DAP/reference0.931340.22
27DAP/reference0.894760.082
39DAP/reference0.708810.018
41DAP/reference0.853270.038
42DAP/reference0.864590.136
43DAP/reference0.805490.016
47DAP/reference1.103260.345
52DAP/reference1.125820.428
57DAP/reference1.22290.746

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.017460.979
17DAP/reference0.823020.006
27DAP/reference0.862260.081
39DAP/reference0.91140.132
41DAP/reference0.919110.169
42DAP/reference1.024451
43DAP/reference0.931640.352
47DAP/reference0.923830.092
52DAP/reference0.878760.031
57DAP/reference0.758670.006

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.991150.699
17DAP/reference0.973370.624
27DAP/reference0.897690.089
39DAP/reference0.992090.693
41DAP/reference0.938010.331
42DAP/reference0.98450.671
43DAP/reference1.15270.388
47DAP/reference0.899540.089
52DAP/reference0.922210.36
57DAP/reference1.138430.614

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.017951
26DAP/20DAP1.627380.338
34DAP/26DAP1.157961
51DAP/34DAP1.357630.854
52DAP/51DAP1.155470.626
53DAP/52DAP0.791380.371
55DAP/53DAP0.893730.82
57DAP/55DAP0.821640.475
62DAP/57DAP1.06221
68DAP/62DAP1.368670.515
68DAP/14DAP0.924341

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.874580.166

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.749140.212
Mature Green Tomato/Ripe Tomato0.721610.029
Immature Eggplant/Mature Eggplant0.912380.329
Ripe Pepper/Ripe Tomato1.656891
Mature Eggplant/Ripe Tomato0.759951

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.06376
1-1-2/M821.086611
12-2/M821.03949
12-4/M821.070841
1-3/M821.008531
2-1-1/M821.617860.764
2-1/M82N/AN/A
2-6/M820.937521
3-2/M820.88619
4-1-1/M820.73096
4-1/M821.16408
4-3-2/M821.108521
4-3/M820.949941
5-3/M821.006121
6-2/M821.09799
6-3/M821.151671
7-1/M820.904060.803
7-2/M820.940350.881
9-3-2/M821.038291

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.08788
IL2-6/WTpooled0.908681
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.021821
IL12-4/WTpooled0.915241
IL1-4/WTpooled0.85881
WT/WTpooled1.002931

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.148930.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.946721
DC3000/delta hrp 6h0.895740.95
DC3000/delta hrp 12h1.085281
DC3000/delta hrp 24h0.937740.483

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.21746
DC3000 delta B/DC3000 delta AB1.430550.093

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.174831
Exp 36h1.077121
Exp 60h1.198020.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.054141
Var 0h0.386770.202
Var 12h I row2-row11.039220.544
Var 12h NI row2-row11.187511
Var 36h I row2-row11.171720.298
Var 36h NI row2-row10.94410.791
Var 60h I row2-row10.767880.293
Var 60h NI row2-row10.845490.69
Time course 0hI-0hNI1.005531
Time course 12hI-12hNI1.166570.073
Time course 36hI-36hNI1.658660.005
Time course 60hI-60hNI2.127370.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.999811
transgenic ySAMdc/azygous control (breaker)0.752780.15
transgenic ySAMdc/azygous control (red)0.999641

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.128260.044

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.98480.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.896221
Manapal/WT (break)0.832240.333
Manapal/WT (red)0.681280.181