Expression of 1-1-6.1.16.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90362 | 0.503 |
27DAP/17DAP | 1.01423 | 0.992 |
39DAP/27DAP | 1.23249 | 0.466 |
41DAP/39DAP | 1.10735 | 0.722 |
42DAP/41DAP | 1.00264 | 1 |
43DAP/42DAP | 1.05271 | 1 |
47DAP/43DAP | 1.06138 | 0.965 |
52DAP/47DAP | 0.82242 | 0.543 |
57DAP/52DAP | 1.10232 | 0.964 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84486 | 0.034 |
17DAP/reference | 0.95771 | 0.342 |
27DAP/reference | 0.94754 | 0.406 |
39DAP/reference | 0.97502 | 0.611 |
41DAP/reference | 0.8301 | 0.065 |
42DAP/reference | 0.91586 | 0.075 |
43DAP/reference | 0.95962 | 0.576 |
47DAP/reference | 0.93771 | 0.174 |
52DAP/reference | 1.00058 | 0.749 |
57DAP/reference | 1.09563 | 0.249 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98546 | 0.697 |
27DAP/17DAP | 1.07393 | 0.912 |
39DAP/27DAP | 0.95072 | 0.737 |
41DAP/39DAP | 1.1709 | 0.727 |
42DAP/41DAP | 1.01305 | 1 |
43DAP/42DAP | 1.02481 | 0.699 |
47DAP/43DAP | 1.05862 | 0.844 |
52DAP/47DAP | 1.14561 | 0.639 |
57DAP/52DAP | 1.20809 | 0.497 |
57DAP/7DAP | 1.27819 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00629 | 1 |
17DAP/reference | 0.93134 | 0.22 |
27DAP/reference | 0.89476 | 0.082 |
39DAP/reference | 0.70881 | 0.018 |
41DAP/reference | 0.85327 | 0.038 |
42DAP/reference | 0.86459 | 0.136 |
43DAP/reference | 0.80549 | 0.016 |
47DAP/reference | 1.10326 | 0.345 |
52DAP/reference | 1.12582 | 0.428 |
57DAP/reference | 1.2229 | 0.746 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01746 | 0.979 |
17DAP/reference | 0.82302 | 0.006 |
27DAP/reference | 0.86226 | 0.081 |
39DAP/reference | 0.9114 | 0.132 |
41DAP/reference | 0.91911 | 0.169 |
42DAP/reference | 1.02445 | 1 |
43DAP/reference | 0.93164 | 0.352 |
47DAP/reference | 0.92383 | 0.092 |
52DAP/reference | 0.87876 | 0.031 |
57DAP/reference | 0.75867 | 0.006 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99115 | 0.699 |
17DAP/reference | 0.97337 | 0.624 |
27DAP/reference | 0.89769 | 0.089 |
39DAP/reference | 0.99209 | 0.693 |
41DAP/reference | 0.93801 | 0.331 |
42DAP/reference | 0.9845 | 0.671 |
43DAP/reference | 1.1527 | 0.388 |
47DAP/reference | 0.89954 | 0.089 |
52DAP/reference | 0.92221 | 0.36 |
57DAP/reference | 1.13843 | 0.614 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01795 | 1 |
26DAP/20DAP | 1.62738 | 0.338 |
34DAP/26DAP | 1.15796 | 1 |
51DAP/34DAP | 1.35763 | 0.854 |
52DAP/51DAP | 1.15547 | 0.626 |
53DAP/52DAP | 0.79138 | 0.371 |
55DAP/53DAP | 0.89373 | 0.82 |
57DAP/55DAP | 0.82164 | 0.475 |
62DAP/57DAP | 1.0622 | 1 |
68DAP/62DAP | 1.36867 | 0.515 |
68DAP/14DAP | 0.92434 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.87458 | 0.166 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.74914 | 0.212 |
Mature Green Tomato/Ripe Tomato | 0.72161 | 0.029 |
Immature Eggplant/Mature Eggplant | 0.91238 | 0.329 |
Ripe Pepper/Ripe Tomato | 1.65689 | 1 |
Mature Eggplant/Ripe Tomato | 0.75995 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.06376 | |
1-1-2/M82 | 1.08661 | 1 |
12-2/M82 | 1.03949 | |
12-4/M82 | 1.07084 | 1 |
1-3/M82 | 1.00853 | 1 |
2-1-1/M82 | 1.61786 | 0.764 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.93752 | 1 |
3-2/M82 | 0.88619 | |
4-1-1/M82 | 0.73096 | |
4-1/M82 | 1.16408 | |
4-3-2/M82 | 1.10852 | 1 |
4-3/M82 | 0.94994 | 1 |
5-3/M82 | 1.00612 | 1 |
6-2/M82 | 1.09799 | |
6-3/M82 | 1.15167 | 1 |
7-1/M82 | 0.90406 | 0.803 |
7-2/M82 | 0.94035 | 0.881 |
9-3-2/M82 | 1.03829 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.08788 | |
IL2-6/WTpooled | 0.90868 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.02182 | 1 |
IL12-4/WTpooled | 0.91524 | 1 |
IL1-4/WTpooled | 0.85881 | |
WT/WTpooled | 1.00293 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.14893 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94672 | 1 |
DC3000/delta hrp 6h | 0.89574 | 0.95 |
DC3000/delta hrp 12h | 1.08528 | 1 |
DC3000/delta hrp 24h | 0.93774 | 0.483 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.21746 | |
DC3000 delta B/DC3000 delta AB | 1.43055 | 0.093 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.17483 | 1 |
Exp 36h | 1.07712 | 1 |
Exp 60h | 1.19802 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05414 | 1 |
Var 0h | 0.38677 | 0.202 |
Var 12h I row2-row1 | 1.03922 | 0.544 |
Var 12h NI row2-row1 | 1.18751 | 1 |
Var 36h I row2-row1 | 1.17172 | 0.298 |
Var 36h NI row2-row1 | 0.9441 | 0.791 |
Var 60h I row2-row1 | 0.76788 | 0.293 |
Var 60h NI row2-row1 | 0.84549 | 0.69 |
Time course 0hI-0hNI | 1.00553 | 1 |
Time course 12hI-12hNI | 1.16657 | 0.073 |
Time course 36hI-36hNI | 1.65866 | 0.005 |
Time course 60hI-60hNI | 2.12737 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99981 | 1 |
transgenic ySAMdc/azygous control (breaker) | 0.75278 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.99964 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.12826 | 0.044 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.9848 | 0.284 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.89622 | 1 |
Manapal/WT (break) | 0.83224 | 0.333 |
Manapal/WT (red) | 0.68128 | 0.181 |
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