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Expression of 1-1-6.1.16.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.877390.464
27DAP/17DAP1.138060.895
39DAP/27DAP1.357550.416
41DAP/39DAP0.968250.72
42DAP/41DAP1.084710.962
43DAP/42DAP2.641190.066
47DAP/43DAP0.442770.049
52DAP/47DAP1.999490.238
57DAP/52DAP0.868780.89

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.737420.047
17DAP/reference0.688380.007
27DAP/reference0.976720.668
39DAP/reference0.778410.013
41DAP/reference0.744280.013
42DAP/reference1.068790.632
43DAP/reference0.931870.302
47DAP/reference1.064230.885
52DAP/reference1.863370.007
57DAP/reference1.567840.01

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.829180.277
27DAP/17DAP2.813150.021
39DAP/27DAP0.519750.039
41DAP/39DAP1.381850.063
42DAP/41DAP0.69660.022
43DAP/42DAP0.806390.043
47DAP/43DAP0.998450.954
52DAP/47DAP1.2930.351
57DAP/52DAP1.032870.857
57DAP/7DAP0.749191

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.774680.073
17DAP/reference0.907010.22
27DAP/reference1.143310.16
39DAP/reference0.728070.015
41DAP/reference1.166180.045
42DAP/reference1.214320.534
43DAP/reference0.815440.066
47DAP/reference0.74880.05
52DAP/reference0.814690.027
57DAP/reference0.993930.629

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.618130.005
17DAP/reference0.6030.011
27DAP/reference0.806590.05
39DAP/reference0.828310.065
41DAP/reference0.963390.384
42DAP/reference0.906970.135
43DAP/reference0.88610.243
47DAP/reference0.900140.077
52DAP/reference0.772210.015
57DAP/reference0.706160.009

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.540970.026
17DAP/reference0.992290.751
27DAP/reference1.097620.487
39DAP/reference0.891110.054
41DAP/reference0.720770.024
42DAP/reference1.243320.209
43DAP/reference0.886880.081
47DAP/reference0.871490.08
52DAP/reference1.169450.436
57DAP/reference1.450130.014

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.052990.966
26DAP/20DAP2.054650.121
34DAP/26DAP1.262820.819
51DAP/34DAP1.165130.925
52DAP/51DAP1.429210.742
53DAP/52DAP0.993440.983
55DAP/53DAP1.324290.062
57DAP/55DAP0.862810.575
62DAP/57DAP1.379160.622
68DAP/62DAP1.50340.944
68DAP/14DAP1.97993N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.883720.326

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.630310.055
Immature Eggplant/Mature Eggplant2.061390.05
Ripe Pepper/Ripe Tomato0.089820.224
Mature Eggplant/Ripe Tomato0.210630.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.126990.742
1-1-2/M820.93721
12-2/M820.784140.955
12-4/M820.84361
1-3/M820.644160.376
2-1-1/M822.485760.342
2-1/M822.762351
2-6/M821.311260.452
3-2/M821.08117N/A
4-1-1/M820.63172N/A
4-1/M820.726311
4-3-2/M82N/AN/A
4-3/M820.748760.72
5-3/M821.754980.427
6-2/M820.640660.497
6-3/M821.039381
7-1/M820.82270.408
7-2/M821.198931
9-3-2/M820.75511N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.679740.473
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.307931
IL12-4/WTpooled0.934970.71
IL1-4/WTpooled0.79530.834
WT/WTpooled1.018191

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation2.12095N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.059850.921
DC3000/delta hrp 6h0.34557N/A
DC3000/delta hrp 12h1.071841
DC3000/delta hrp 24h1.102760.158

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.218510.409
Exp 60h1.789820.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.99554N/A
Var 0h1.013061
Var 12h I row2-row11.152790.654
Var 12h NI row2-row11.203811
Var 36h I row2-row11.045641
Var 36h NI row2-row10.433971
Var 60h I row2-row11.686220.562
Var 60h NI row2-row10.363530.483
Time course 0hI-0hNI1.083680.799
Time course 12hI-12hNI1.94820.145
Time course 36hI-36hNI4.970130.005
Time course 60hI-60hNI4.928360.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.52940.289
transgenic ySAMdc/azygous control (breaker)1.955450.248
transgenic ySAMdc/azygous control (red)0.781491

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.933860.099

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.728230.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.693520.14
Manapal/WT (break)0.826551
Manapal/WT (red)2.661060.133