Tomato Functional Genomics Database (TFGD)

Expression of 1-1-6.1.17.10

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.47588	0.264
27DAP/17DAP	0.88849	0.753
39DAP/27DAP	1.27591	0.511
41DAP/39DAP	1.45963	0.245
42DAP/41DAP	1.27284	0.882
43DAP/42DAP	1.03585	1
47DAP/43DAP	1.11688	0.943
52DAP/47DAP	1.28824	0.754
57DAP/52DAP	1.09399	0.985

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.12081	0.522
17DAP/reference	1.12919	0.071
27DAP/reference	1.18045	0.306
39DAP/reference	1.03311	1
41DAP/reference	0.9183	0.341
42DAP/reference	1.10058	0.431
43DAP/reference	1.10724	0.678
47DAP/reference	1.11061	0.419
52DAP/reference	1.33833	0.036
57DAP/reference	1.18068	0.186

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.20956	0.63
27DAP/17DAP	1.01586	0.887
39DAP/27DAP	1.53473	0.56
41DAP/39DAP	0.70213
42DAP/41DAP	0.9211	0.515
43DAP/42DAP	0.95209	0.684
47DAP/43DAP	0.69936	0.175
52DAP/47DAP	1.02955	0.93
57DAP/52DAP	0.93396	0.608
57DAP/7DAP	0.96797	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.7405	0.296
17DAP/reference	0.77476	0.031
27DAP/reference	0.80681	0.031
39DAP/reference	0.78864	0.013
41DAP/reference	0.8932	0.153
42DAP/reference	0.91579	0.248
43DAP/reference	0.81335	0.046
47DAP/reference	0.99288	1
52DAP/reference	0.77219	0.03
57DAP/reference	0.85236	0.026

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.90225	0.362
17DAP/reference	1.10705	0.739
27DAP/reference	1.33776	0.017
39DAP/reference	1.36695	0.05
41DAP/reference	1.26385	0.118
42DAP/reference	1.06477	1
43DAP/reference	1.12937	0.827
47DAP/reference	1.0117	1
52DAP/reference	1.07053	0.667
57DAP/reference	1.04169	0.737

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.01871	0.75
17DAP/reference	0.94016	0.508
27DAP/reference	0.99922	0.624
39DAP/reference	0.89234	0.246
41DAP/reference	0.82314	0.107
42DAP/reference	0.75795	0.134
43DAP/reference	0.99294	0.59
47DAP/reference	1.14392	0.12
52DAP/reference	0.71247	0.142
57DAP/reference	1.3396	0.111

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.93856	1
26DAP/20DAP	0.73037
34DAP/26DAP	1.1892	1
51DAP/34DAP	0.72485	0.063
52DAP/51DAP	1.1421	1
53DAP/52DAP	1.44375	0.58
55DAP/53DAP	1.22566	0.798
57DAP/55DAP	0.93871	0.748
62DAP/57DAP	0.75299	0.088
68DAP/62DAP	3.78478	0.491
68DAP/14DAP	1.00704	0.958

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.73499

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	1.46681	0.437
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	0.34262
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	0.93325
1-3/M82	N/A	N/A
2-1-1/M82	0.95274
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	1.08641
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	1.13574
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.22153	0.365
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	0.83321	1
IL7-3/WTpooled	N/A	N/A
IL12-4/WTpooled	0.68666
IL1-4/WTpooled	1.2202
WT/WTpooled	N/A	N/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.07413	0.846
DC3000/delta hrp 6h	0.83392
DC3000/delta hrp 12h	1.33035	0.24
DC3000/delta hrp 24h	0.98254	0.851

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	0.95104	1
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.01438	1
Var 0h	1.16526	0.421
Var 12h I row2-row1	0.87602	0.77
Var 12h NI row2-row1	0.8259	0.82
Var 36h I row2-row1	0.76416	1
Var 36h NI row2-row1	0.8156
Var 60h I row2-row1	0.44668	0.374
Var 60h NI row2-row1	1.22377	1
Time course 0hI-0hNI	1.08859	0.852
Time course 12hI-12hNI	0.95162	0.695
Time course 36hI-36hNI	1.08902	0.089
Time course 60hI-60hNI	1.05335	1

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.91287	0.409
transgenic ySAMdc/azygous control (breaker)	1.05565	1
transgenic ySAMdc/azygous control (red)	1.28529	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.08023	1

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.18854	0.105
Manapal/WT (break)	0.90717	1
Manapal/WT (red)	1.46761	0.413