Expression of 1-1-6.1.17.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.851160.05
27DAP/17DAP1.68440.399
39DAP/27DAP0.957080.67
41DAP/39DAP0.896720.591
42DAP/41DAP0.956661
43DAP/42DAP1.044650.937
47DAP/43DAP1.678070.196
52DAP/47DAP0.863130.662
57DAP/52DAP1.200340.955

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.05460.693
17DAP/reference1.279420.092
27DAP/reference1.105780.487
39DAP/reference1.108660.423
41DAP/reference0.923990.434
42DAP/reference1.108280.311
43DAP/reference0.977050.691
47DAP/reference1.316630.004
52DAP/reference1.313870.121
57DAP/reference1.346390.014

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.802380.077
27DAP/17DAP1.263580.08
39DAP/27DAP0.850870.146
41DAP/39DAP0.897270.68
42DAP/41DAP1.064580.916
43DAP/42DAP0.800350.058
47DAP/43DAP0.898110.373
52DAP/47DAP1.123370.593
57DAP/52DAP1.097880.907
57DAP/7DAP1.221341

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.886210.27
17DAP/reference0.935760.447
27DAP/reference0.894860.071
39DAP/reference0.693020.021
41DAP/reference0.884590.122
42DAP/reference0.764090.063
43DAP/reference0.812440.027
47DAP/reference0.886540.293
52DAP/reference0.711240.028
57DAP/reference0.846930.061

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.08440.605
17DAP/reference1.388370.448
27DAP/reference1.206350.38
39DAP/reference1.301220.247
41DAP/reference1.221670.248
42DAP/reference1.230760.045
43DAP/reference0.82480.162
47DAP/reference1.026690.916
52DAP/reference1.299750.145
57DAP/reference1.004880.874

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.862580.054
17DAP/reference0.837170.292
27DAP/reference0.841060.089
39DAP/reference0.824550.05
41DAP/reference0.823920.086
42DAP/reference0.768580.172
43DAP/reference1.030630.685
47DAP/reference1.212720.179
52DAP/reference0.886710.262
57DAP/reference1.147340.419

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.080031
26DAP/20DAP1.53441
34DAP/26DAP2.065150.819
51DAP/34DAP0.727720.449
52DAP/51DAP0.934911
53DAP/52DAP1.065521
55DAP/53DAP0.867280.43
57DAP/55DAP1.44020.525
62DAP/57DAP1.042051
68DAP/62DAP1.032620.939
68DAP/14DAP0.847151

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.377020.814

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.129940.814
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.24995
Mature Eggplant/Ripe Tomato0.282880.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.328620.877
1-1-2/M821.022870.977
12-2/M821.01771
12-4/M820.873091
1-3/M820.924220.441
2-1-1/M820.963160.784
2-1/M821.129271
2-6/M821.122490.364
3-2/M820.99572
4-1-1/M821.208150.977
4-1/M820.632790.665
4-3-2/M820.96208
4-3/M821.024721
5-3/M821.083091
6-2/M820.90441
6-3/M821.03769
7-1/M821.239420.598
7-2/M820.951461
9-3-2/M821.08879

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.708460.277
IL2-6/WTpooled1.19810.788
IL7-5/WTpooled0.809841
IL7-3/WTpooled2.262931
IL12-4/WTpooled1.270460.891
IL1-4/WTpooled1.564861
WT/WTpooled1.010241

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.17140.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.153140.875
DC3000/delta hrp 6h1.03895
DC3000/delta hrp 12h0.67145
DC3000/delta hrp 24h1.159540.232

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.478130.16
DC3000 delta B/DC3000 delta AB2.004720.137

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.093541
Var 0h0.903960.933
Var 12h I row2-row11.407350.58
Var 12h NI row2-row11.966170.649
Var 36h I row2-row11.758370.908
Var 36h NI row2-row10.655211
Var 60h I row2-row10.969740.952
Var 60h NI row2-row10.761390.866
Time course 0hI-0hNI0.840480.935
Time course 12hI-12hNI0.959630.556
Time course 36hI-36hNI1.327650.101
Time course 60hI-60hNI1.290980.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)0.577160.251
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.351420.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.687550.125
Manapal/WT (red)0.960760.863