Expression of 1-1-6.1.17.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93799 | 0.627 |
27DAP/17DAP | 1.51306 | 0.873 |
39DAP/27DAP | 1.07172 | 0.946 |
41DAP/39DAP | 0.84382 | 0.407 |
42DAP/41DAP | 0.77106 | 0.774 |
43DAP/42DAP | 0.8047 | 0.391 |
47DAP/43DAP | 0.4345 | 0.049 |
52DAP/47DAP | 1.28926 | 0.43 |
57DAP/52DAP | 1.28748 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18423 | 0.522 |
17DAP/reference | 1.10219 | 0.696 |
27DAP/reference | 1.12756 | 0.339 |
39DAP/reference | 0.90139 | 0.324 |
41DAP/reference | 0.83793 | 0.085 |
42DAP/reference | 1.10653 | 0.076 |
43DAP/reference | 0.92801 | 0.429 |
47DAP/reference | 1.14205 | 0.062 |
52DAP/reference | 1.3935 | 0.059 |
57DAP/reference | 1.24961 | 0.141 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.87192 | 0.336 |
27DAP/17DAP | 1.27537 | 0.465 |
39DAP/27DAP | 0.68837 | 0.076 |
41DAP/39DAP | 0.93818 | 0.822 |
42DAP/41DAP | 0.83722 | 0.074 |
43DAP/42DAP | 1.30776 | 0.212 |
47DAP/43DAP | 0.92455 | 0.499 |
52DAP/47DAP | 1.01769 | 0.979 |
57DAP/52DAP | 1.52877 | 0.053 |
57DAP/7DAP | 0.99905 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.26257 | 0.385 |
17DAP/reference | 1.15866 | 0.269 |
27DAP/reference | 1.00538 | 0.8 |
39DAP/reference | 0.7608 | 0.013 |
41DAP/reference | 1.03677 | 0.778 |
42DAP/reference | 0.83535 | 0.023 |
43DAP/reference | 1.07751 | 0.603 |
47DAP/reference | 1.02199 | 0.996 |
52DAP/reference | 0.8919 | 0.163 |
57DAP/reference | 0.85983 | 0.057 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85504 | 0.115 |
17DAP/reference | 1.24541 | 0.459 |
27DAP/reference | 1.09591 | 0.735 |
39DAP/reference | 1.24899 | 0.188 |
41DAP/reference | 1.19818 | 0.269 |
42DAP/reference | 1.16161 | 0.569 |
43DAP/reference | 0.94802 | 0.486 |
47DAP/reference | 1.00379 | 0.79 |
52DAP/reference | 1.0843 | 0.789 |
57DAP/reference | 1.04781 | 0.916 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03751 | 0.75 |
17DAP/reference | 1.19221 | 0.118 |
27DAP/reference | 1.00501 | 0.843 |
39DAP/reference | 0.8976 | 0.122 |
41DAP/reference | 0.86115 | 0.167 |
42DAP/reference | 1.14739 | 0.589 |
43DAP/reference | 0.95793 | 0.523 |
47DAP/reference | 1.13059 | 0.68 |
52DAP/reference | 0.79686 | 0.242 |
57DAP/reference | 1.15417 | 0.57 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.05229 | 1 |
26DAP/20DAP | 1.99653 | 0.097 |
34DAP/26DAP | 0.89836 | 0.702 |
51DAP/34DAP | 0.63402 | 0.049 |
52DAP/51DAP | 1.44456 | 0.035 |
53DAP/52DAP | 0.91011 | 0.587 |
55DAP/53DAP | 0.88467 | 0.592 |
57DAP/55DAP | 1.26193 | 0.301 |
62DAP/57DAP | 1.14968 | 0.935 |
68DAP/62DAP | 1.11898 | 0.878 |
68DAP/14DAP | 0.95255 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.3303 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.89405 | 0.089 |
Mature Green Tomato/Ripe Tomato | 2.52703 | 0.015 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 3.52419 | |
Mature Eggplant/Ripe Tomato | 7.05094 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.09674 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.90297 | 0.619 |
1-3/M82 | 0.86988 | |
2-1-1/M82 | 0.94419 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.9342 | 1 |
3-2/M82 | 0.76923 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.07111 | |
4-3/M82 | 1.0409 | 1 |
5-3/M82 | 0.92005 | 1 |
6-2/M82 | 0.97439 | 1 |
6-3/M82 | 1.27215 | |
7-1/M82 | 0.9394 | 1 |
7-2/M82 | 1.12001 | 0.291 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.76296 | 0.321 |
IL2-6/WTpooled | 1.13071 | 0.46 |
IL7-5/WTpooled | 0.76345 | 1 |
IL7-3/WTpooled | 0.54999 | 0.293 |
IL12-4/WTpooled | 0.81228 | 0.71 |
IL1-4/WTpooled | 0.76668 | 0.415 |
WT/WTpooled | 1.00771 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.81457 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.07106 | 0.758 |
DC3000/delta hrp 6h | 0.82996 | |
DC3000/delta hrp 12h | 0.80812 | 1 |
DC3000/delta hrp 24h | 0.83915 | 0.145 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.12145 | 0.598 |
DC3000 delta B/DC3000 delta AB | 0.81375 | 0.032 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03247 | 1 |
Var 0h | 1.06141 | 0.936 |
Var 12h I row2-row1 | 1.07685 | 0.654 |
Var 12h NI row2-row1 | 1.12892 | 1 |
Var 36h I row2-row1 | 1.02297 | 1 |
Var 36h NI row2-row1 | 0.72029 | 0.469 |
Var 60h I row2-row1 | 0.88609 | 0.832 |
Var 60h NI row2-row1 | 0.87081 | 0.977 |
Time course 0hI-0hNI | 1.01831 | 1 |
Time course 12hI-12hNI | 1.0839 | 0.335 |
Time course 36hI-36hNI | 1.05843 | 0.651 |
Time course 60hI-60hNI | 0.88501 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.66456 | 0.315 |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.02396 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.16788 | 0.083 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.84349 | 0.181 |
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