Expression of 1-1-6.1.17.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.937990.627
27DAP/17DAP1.513060.873
39DAP/27DAP1.071720.946
41DAP/39DAP0.843820.407
42DAP/41DAP0.771060.774
43DAP/42DAP0.80470.391
47DAP/43DAP0.43450.049
52DAP/47DAP1.289260.43
57DAP/52DAP1.287480.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.184230.522
17DAP/reference1.102190.696
27DAP/reference1.127560.339
39DAP/reference0.901390.324
41DAP/reference0.837930.085
42DAP/reference1.106530.076
43DAP/reference0.928010.429
47DAP/reference1.142050.062
52DAP/reference1.39350.059
57DAP/reference1.249610.141

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.871920.336
27DAP/17DAP1.275370.465
39DAP/27DAP0.688370.076
41DAP/39DAP0.938180.822
42DAP/41DAP0.837220.074
43DAP/42DAP1.307760.212
47DAP/43DAP0.924550.499
52DAP/47DAP1.017690.979
57DAP/52DAP1.528770.053
57DAP/7DAP0.999051

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.262570.385
17DAP/reference1.158660.269
27DAP/reference1.005380.8
39DAP/reference0.76080.013
41DAP/reference1.036770.778
42DAP/reference0.835350.023
43DAP/reference1.077510.603
47DAP/reference1.021990.996
52DAP/reference0.89190.163
57DAP/reference0.859830.057

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.855040.115
17DAP/reference1.245410.459
27DAP/reference1.095910.735
39DAP/reference1.248990.188
41DAP/reference1.198180.269
42DAP/reference1.161610.569
43DAP/reference0.948020.486
47DAP/reference1.003790.79
52DAP/reference1.08430.789
57DAP/reference1.047810.916

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.037510.75
17DAP/reference1.192210.118
27DAP/reference1.005010.843
39DAP/reference0.89760.122
41DAP/reference0.861150.167
42DAP/reference1.147390.589
43DAP/reference0.957930.523
47DAP/reference1.130590.68
52DAP/reference0.796860.242
57DAP/reference1.154170.57

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.052291
26DAP/20DAP1.996530.097
34DAP/26DAP0.898360.702
51DAP/34DAP0.634020.049
52DAP/51DAP1.444560.035
53DAP/52DAP0.910110.587
55DAP/53DAP0.884670.592
57DAP/55DAP1.261930.301
62DAP/57DAP1.149680.935
68DAP/62DAP1.118980.878
68DAP/14DAP0.952551

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.33030.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.894050.089
Mature Green Tomato/Ripe Tomato2.527030.015
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato3.52419
Mature Eggplant/Ripe Tomato7.050940.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.09674
12-2/M82N/AN/A
12-4/M820.902970.619
1-3/M820.86988
2-1-1/M820.94419
2-1/M82N/AN/A
2-6/M820.93421
3-2/M820.76923
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.07111
4-3/M821.04091
5-3/M820.920051
6-2/M820.974391
6-3/M821.27215
7-1/M820.93941
7-2/M821.120010.291
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.762960.321
IL2-6/WTpooled1.130710.46
IL7-5/WTpooled0.763451
IL7-3/WTpooled0.549990.293
IL12-4/WTpooled0.812280.71
IL1-4/WTpooled0.766680.415
WT/WTpooled1.007711

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.814570.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.071060.758
DC3000/delta hrp 6h0.82996
DC3000/delta hrp 12h0.808121
DC3000/delta hrp 24h0.839150.145

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.121450.598
DC3000 delta B/DC3000 delta AB0.813750.032

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.032471
Var 0h1.061410.936
Var 12h I row2-row11.076850.654
Var 12h NI row2-row11.128921
Var 36h I row2-row11.022971
Var 36h NI row2-row10.720290.469
Var 60h I row2-row10.886090.832
Var 60h NI row2-row10.870810.977
Time course 0hI-0hNI1.018311
Time course 12hI-12hNI1.08390.335
Time course 36hI-36hNI1.058430.651
Time course 60hI-60hNI0.885010.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.664560.315
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.023961

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.167880.083
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.843490.181