Expression of 1-1-6.1.18.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.592580.097
27DAP/17DAP2.30030.113
39DAP/27DAP0.870630.544
41DAP/39DAP1.026770.958
42DAP/41DAP1.005781
43DAP/42DAP1.283210.47
47DAP/43DAP0.67230.103
52DAP/47DAP2.256130.112
57DAP/52DAP0.751290.666

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.844520.07
17DAP/reference0.933630.298
27DAP/reference0.899240.043
39DAP/reference1.048770.393
41DAP/reference0.981690.667
42DAP/reference0.932450.124
43DAP/reference0.949220.41
47DAP/reference0.929450.083
52DAP/reference0.94570.31
57DAP/reference0.983280.526

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.166110.379
27DAP/17DAP1.030520.968
39DAP/27DAP1.60720.075
41DAP/39DAP0.907960.747
42DAP/41DAP0.969730.737
43DAP/42DAP1.553760.212
47DAP/43DAP1.235320.475
52DAP/47DAP1.070670.844
57DAP/52DAP1.463820.096
57DAP/7DAP1.518320.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.761160.108
17DAP/reference0.941250.295
27DAP/reference1.011531
39DAP/reference1.082160.436
41DAP/reference1.06340.836
42DAP/reference1.309330.889
43DAP/reference1.177780.079
47DAP/reference1.00241
52DAP/reference1.184610.459
57DAP/reference1.153170.331

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.983860.72
17DAP/reference0.878730.17
27DAP/reference0.823990.045
39DAP/reference0.965880.428
41DAP/reference0.935610.237
42DAP/reference0.91110.169
43DAP/reference1.019630.721
47DAP/reference0.949820.261
52DAP/reference0.984520.537
57DAP/reference1.000940.754

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.885070.214
17DAP/reference1.055350.738
27DAP/reference1.243230.216
39DAP/reference1.110070.39
41DAP/reference1.16780.486
42DAP/reference1.062160.863
43DAP/reference0.926750.348
47DAP/reference0.987310.574
52DAP/reference1.000330.747
57DAP/reference0.908240.268

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.099211
26DAP/20DAP0.5512
34DAP/26DAP1.453680.819
51DAP/34DAP1.657910.068
52DAP/51DAP0.72441
53DAP/52DAP1.55270.067
55DAP/53DAP0.878180.445
57DAP/55DAP1.254050.156
62DAP/57DAP0.621170.028
68DAP/62DAP1.439690.413
68DAP/14DAP1.307310.694

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.264090.068

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper3.220220.058
Mature Green Tomato/Ripe Tomato0.334860.017
Immature Eggplant/Mature Eggplant0.90631
Ripe Pepper/Ripe Tomato0.581810.224
Mature Eggplant/Ripe Tomato0.74974

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.854520.841
1-1-2/M820.974371
12-2/M821.371841
12-4/M821.03850.655
1-3/M820.770170.441
2-1-1/M820.879190.784
2-1/M820.697070.74
2-6/M820.681370.501
3-2/M821.16182
4-1-1/M820.561350.908
4-1/M820.93761
4-3-2/M820.780451
4-3/M820.519640.551
5-3/M821.048431
6-2/M820.794361
6-3/M820.890140.982
7-1/M820.650960.452
7-2/M820.706460.565
9-3-2/M820.589670.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.993031
DC3000/delta hrp 6h1.248571
DC3000/delta hrp 12h1.076241
DC3000/delta hrp 24h1.003581

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.218481
Exp 36h0.92230.82
Exp 60h1.166350.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.95395
Var 0h0.626281
Var 12h I row2-row11.133340.443
Var 12h NI row2-row11.053310.649
Var 36h I row2-row10.91481
Var 36h NI row2-row10.829340.645
Var 60h I row2-row11.0001
Var 60h NI row2-row11.104421
Time course 0hI-0hNI1.079950.799
Time course 12hI-12hNI0.899540.637
Time course 36hI-36hNI1.498490.453
Time course 60hI-60hNI0.967271

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.68370.338
transgenic ySAMdc/azygous control (breaker)1.727560.165
transgenic ySAMdc/azygous control (red)0.926761

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.972080.133

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.049540.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.676250.172
Manapal/WT (break)1.443041
Manapal/WT (red)0.237210.181