Expression of 1-1-6.1.18.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.59258 | 0.097 |
27DAP/17DAP | 2.3003 | 0.113 |
39DAP/27DAP | 0.87063 | 0.544 |
41DAP/39DAP | 1.02677 | 0.958 |
42DAP/41DAP | 1.00578 | 1 |
43DAP/42DAP | 1.28321 | 0.47 |
47DAP/43DAP | 0.6723 | 0.103 |
52DAP/47DAP | 2.25613 | 0.112 |
57DAP/52DAP | 0.75129 | 0.666 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84452 | 0.07 |
17DAP/reference | 0.93363 | 0.298 |
27DAP/reference | 0.89924 | 0.043 |
39DAP/reference | 1.04877 | 0.393 |
41DAP/reference | 0.98169 | 0.667 |
42DAP/reference | 0.93245 | 0.124 |
43DAP/reference | 0.94922 | 0.41 |
47DAP/reference | 0.92945 | 0.083 |
52DAP/reference | 0.9457 | 0.31 |
57DAP/reference | 0.98328 | 0.526 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16611 | 0.379 |
27DAP/17DAP | 1.03052 | 0.968 |
39DAP/27DAP | 1.6072 | 0.075 |
41DAP/39DAP | 0.90796 | 0.747 |
42DAP/41DAP | 0.96973 | 0.737 |
43DAP/42DAP | 1.55376 | 0.212 |
47DAP/43DAP | 1.23532 | 0.475 |
52DAP/47DAP | 1.07067 | 0.844 |
57DAP/52DAP | 1.46382 | 0.096 |
57DAP/7DAP | 1.51832 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76116 | 0.108 |
17DAP/reference | 0.94125 | 0.295 |
27DAP/reference | 1.01153 | 1 |
39DAP/reference | 1.08216 | 0.436 |
41DAP/reference | 1.0634 | 0.836 |
42DAP/reference | 1.30933 | 0.889 |
43DAP/reference | 1.17778 | 0.079 |
47DAP/reference | 1.0024 | 1 |
52DAP/reference | 1.18461 | 0.459 |
57DAP/reference | 1.15317 | 0.331 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98386 | 0.72 |
17DAP/reference | 0.87873 | 0.17 |
27DAP/reference | 0.82399 | 0.045 |
39DAP/reference | 0.96588 | 0.428 |
41DAP/reference | 0.93561 | 0.237 |
42DAP/reference | 0.9111 | 0.169 |
43DAP/reference | 1.01963 | 0.721 |
47DAP/reference | 0.94982 | 0.261 |
52DAP/reference | 0.98452 | 0.537 |
57DAP/reference | 1.00094 | 0.754 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88507 | 0.214 |
17DAP/reference | 1.05535 | 0.738 |
27DAP/reference | 1.24323 | 0.216 |
39DAP/reference | 1.11007 | 0.39 |
41DAP/reference | 1.1678 | 0.486 |
42DAP/reference | 1.06216 | 0.863 |
43DAP/reference | 0.92675 | 0.348 |
47DAP/reference | 0.98731 | 0.574 |
52DAP/reference | 1.00033 | 0.747 |
57DAP/reference | 0.90824 | 0.268 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09921 | 1 |
26DAP/20DAP | 0.5512 | |
34DAP/26DAP | 1.45368 | 0.819 |
51DAP/34DAP | 1.65791 | 0.068 |
52DAP/51DAP | 0.7244 | 1 |
53DAP/52DAP | 1.5527 | 0.067 |
55DAP/53DAP | 0.87818 | 0.445 |
57DAP/55DAP | 1.25405 | 0.156 |
62DAP/57DAP | 0.62117 | 0.028 |
68DAP/62DAP | 1.43969 | 0.413 |
68DAP/14DAP | 1.30731 | 0.694 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.26409 | 0.068 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 3.22022 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.33486 | 0.017 |
Immature Eggplant/Mature Eggplant | 0.90631 | |
Ripe Pepper/Ripe Tomato | 0.58181 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.74974 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.85452 | 0.841 |
1-1-2/M82 | 0.97437 | 1 |
12-2/M82 | 1.37184 | 1 |
12-4/M82 | 1.0385 | 0.655 |
1-3/M82 | 0.77017 | 0.441 |
2-1-1/M82 | 0.87919 | 0.784 |
2-1/M82 | 0.69707 | 0.74 |
2-6/M82 | 0.68137 | 0.501 |
3-2/M82 | 1.16182 | |
4-1-1/M82 | 0.56135 | 0.908 |
4-1/M82 | 0.9376 | 1 |
4-3-2/M82 | 0.78045 | 1 |
4-3/M82 | 0.51964 | 0.551 |
5-3/M82 | 1.04843 | 1 |
6-2/M82 | 0.79436 | 1 |
6-3/M82 | 0.89014 | 0.982 |
7-1/M82 | 0.65096 | 0.452 |
7-2/M82 | 0.70646 | 0.565 |
9-3-2/M82 | 0.58967 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99303 | 1 |
DC3000/delta hrp 6h | 1.24857 | 1 |
DC3000/delta hrp 12h | 1.07624 | 1 |
DC3000/delta hrp 24h | 1.00358 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.21848 | 1 |
Exp 36h | 0.9223 | 0.82 |
Exp 60h | 1.16635 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.95395 | |
Var 0h | 0.62628 | 1 |
Var 12h I row2-row1 | 1.13334 | 0.443 |
Var 12h NI row2-row1 | 1.05331 | 0.649 |
Var 36h I row2-row1 | 0.91481 | |
Var 36h NI row2-row1 | 0.82934 | 0.645 |
Var 60h I row2-row1 | 1.0001 | |
Var 60h NI row2-row1 | 1.10442 | 1 |
Time course 0hI-0hNI | 1.07995 | 0.799 |
Time course 12hI-12hNI | 0.89954 | 0.637 |
Time course 36hI-36hNI | 1.49849 | 0.453 |
Time course 60hI-60hNI | 0.96727 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.6837 | 0.338 |
transgenic ySAMdc/azygous control (breaker) | 1.72756 | 0.165 |
transgenic ySAMdc/azygous control (red) | 0.92676 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97208 | 0.133 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.04954 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.67625 | 0.172 |
Manapal/WT (break) | 1.44304 | 1 |
Manapal/WT (red) | 0.23721 | 0.181 |
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