Expression of 1-1-6.1.18.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.982510.752
27DAP/17DAP1.364790.883
39DAP/27DAP1.149980.702
41DAP/39DAP1.168670.696
42DAP/41DAP1.070771
43DAP/42DAP1.236310.772
47DAP/43DAP1.017310.979
52DAP/47DAP0.773970.466
57DAP/52DAP1.034840.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.017710.928
17DAP/reference0.9610.419
27DAP/reference1.001430.904
39DAP/reference1.026630.734
41DAP/reference0.950230.542
42DAP/reference0.942330.211
43DAP/reference0.966330.576
47DAP/reference1.023270.773
52DAP/reference1.005841
57DAP/reference0.90980.044

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.157820.172
27DAP/17DAP0.990050.943
39DAP/27DAP1.38010.054
41DAP/39DAP0.734030.029
42DAP/41DAP1.123490.55
43DAP/42DAP1.39110.04
47DAP/43DAP1.003231
52DAP/47DAP0.978980.893
57DAP/52DAP0.94370.514
57DAP/7DAP1.404691

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.978780.55
17DAP/reference0.717230.011
27DAP/reference0.7680.012
39DAP/reference0.99320.64
41DAP/reference0.848180.127
42DAP/reference0.99290.554
43DAP/reference0.966070.44
47DAP/reference1.099530.44
52DAP/reference0.980620.571
57DAP/reference1.05940.654

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.117710.117
17DAP/reference1.025940.756
27DAP/reference1.052390.757
39DAP/reference1.128560.213
41DAP/reference1.012431
42DAP/reference0.97370.433
43DAP/reference0.974680.581
47DAP/reference0.970730.178
52DAP/reference1.019620.882
57DAP/reference1.110380.353

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.993280.653
17DAP/reference0.970850.624
27DAP/reference0.791210.031
39DAP/reference0.867430.083
41DAP/reference0.940960.331
42DAP/reference0.973640.671
43DAP/reference0.928530.256
47DAP/reference0.99610.687
52DAP/reference1.165080.549
57DAP/reference1.033120.92

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.053920.966
26DAP/20DAP0.816730.512
34DAP/26DAP1.276750.819
51DAP/34DAP1.33330.053
52DAP/51DAP0.943771
53DAP/52DAP1.201340.334
55DAP/53DAP1.143070.181
57DAP/55DAP0.949080.76
62DAP/57DAP1.138381
68DAP/62DAP0.8390.406
68DAP/14DAP1.268760.189

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.44490.028

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.577990.124
Mature Green Tomato/Ripe Tomato0.966520.522
Immature Eggplant/Mature Eggplant1.261440.074
Ripe Pepper/Ripe Tomato1.286631
Mature Eggplant/Ripe Tomato0.335440.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.49753
1-1-2/M821.101961
12-2/M821.052230.61
12-4/M820.829751
1-3/M822.046510.26
2-1-1/M820.640780.683
2-1/M820.527190.306
2-6/M820.783891
3-2/M820.889911
4-1-1/M820.850871
4-1/M820.858571
4-3-2/M820.78502
4-3/M820.758570.611
5-3/M821.184910.572
6-2/M820.59840.497
6-3/M820.963851
7-1/M820.750560.509
7-2/M820.465920.565
9-3-2/M821.120980.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.668920.277
IL2-6/WTpooled0.769780.473
IL7-5/WTpooled0.730781
IL7-3/WTpooled1.505211
IL12-4/WTpooled1.098590.523
IL1-4/WTpooled1.319260.426
WT/WTpooled1.000571

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.119550.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.015061
DC3000/delta hrp 6h1.112011
DC3000/delta hrp 12h1.102181
DC3000/delta hrp 24h1.064190.779

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.44832
DC3000 delta B/DC3000 delta AB1.074020.593

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.65361
Exp 36h0.982381
Exp 60h0.776250.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.064171
Var 0h0.516690.258
Var 12h I row2-row10.992151
Var 12h NI row2-row10.913620.713
Var 36h I row2-row11.070441
Var 36h NI row2-row10.869720.584
Var 60h I row2-row10.97270.952
Var 60h NI row2-row10.945270.866
Time course 0hI-0hNI1.103540.603
Time course 12hI-12hNI0.942040.54
Time course 36hI-36hNI1.148010.08
Time course 60hI-60hNI2.512450.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.125580.331
transgenic ySAMdc/azygous control (breaker)0.901720.251
transgenic ySAMdc/azygous control (red)0.870771

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.25740.036

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.97310.308

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.310.105
Manapal/WT (break)0.898261
Manapal/WT (red)1.173270.413