Expression of 1-1-6.1.18.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99206 | 0.919 |
27DAP/17DAP | 1.19654 | 0.809 |
39DAP/27DAP | 0.87286 | 0.641 |
41DAP/39DAP | 0.94688 | 0.824 |
42DAP/41DAP | 1.06173 | 0.999 |
43DAP/42DAP | 1.23556 | 0.864 |
47DAP/43DAP | 1.35904 | 0.769 |
52DAP/47DAP | 1.10677 | 0.898 |
57DAP/52DAP | 1.26949 | 0.993 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.24074 | 0.089 |
17DAP/reference | 1.31428 | 0.077 |
27DAP/reference | 1.13041 | 0.143 |
39DAP/reference | 0.88869 | 0.24 |
41DAP/reference | 0.97619 | 0.667 |
42DAP/reference | 1.04083 | 0.628 |
43DAP/reference | 1.17773 | 0.064 |
47DAP/reference | 0.9417 | 0.418 |
52DAP/reference | 1.24655 | 0.524 |
57DAP/reference | 0.88611 | 0.21 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.36598 | 0.5 |
27DAP/17DAP | 1.25357 | 0.429 |
39DAP/27DAP | 1.00259 | 0.775 |
41DAP/39DAP | 1.10397 | 0.79 |
42DAP/41DAP | 0.8813 | 0.279 |
43DAP/42DAP | 1.35599 | 0.25 |
47DAP/43DAP | 1.09698 | 0.822 |
52DAP/47DAP | 1.07045 | 0.933 |
57DAP/52DAP | 1.03338 | 0.907 |
57DAP/7DAP | 1.35249 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09126 | 0.524 |
17DAP/reference | 1.06817 | 0.18 |
27DAP/reference | 1.1285 | 0.131 |
39DAP/reference | 1.13611 | 0.033 |
41DAP/reference | 1.1031 | 0.363 |
42DAP/reference | 1.14934 | 0.534 |
43DAP/reference | 1.12592 | 0.537 |
47DAP/reference | 1.26886 | 0.337 |
52DAP/reference | 0.9481 | 0.213 |
57DAP/reference | 1.0261 | 1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.78334 | 0.362 |
17DAP/reference | 1.20145 | 0.873 |
27DAP/reference | 0.61369 | |
39DAP/reference | 1.4278 | 0.424 |
41DAP/reference | 0.67976 | 0.068 |
42DAP/reference | 1.02609 | 1 |
43DAP/reference | 1.05534 | 0.721 |
47DAP/reference | 0.88081 | 0.302 |
52DAP/reference | 1.13372 | 0.322 |
57DAP/reference | 1.93849 | 0.177 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07381 | 0.172 |
17DAP/reference | 1.13367 | 0.283 |
27DAP/reference | 0.97734 | 0.539 |
39DAP/reference | 1.11569 | 0.613 |
41DAP/reference | 1.06342 | 0.239 |
42DAP/reference | 1.21268 | 0.091 |
43DAP/reference | 1.05772 | 0.432 |
47DAP/reference | 1.06497 | 1 |
52DAP/reference | 1.17015 | 0.349 |
57DAP/reference | 1.4682 | |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.9651 | 1 |
26DAP/20DAP | 0.76628 | 1 |
34DAP/26DAP | 1.11397 | 1 |
51DAP/34DAP | 1.18352 | 0.706 |
52DAP/51DAP | 1.01689 | 1 |
53DAP/52DAP | 0.61958 | 0.402 |
55DAP/53DAP | 1.26397 | 0.104 |
57DAP/55DAP | 1.0392 | 0.969 |
62DAP/57DAP | 0.96549 | 0.994 |
68DAP/62DAP | 0.84957 | 0.505 |
68DAP/14DAP | 0.83008 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.99536 | 0.774 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.35917 | |
5-3/M82 | 1.00689 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.16699 | 0.277 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.39123 | 1 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.90917 | |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.17802 | 0.222 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01853 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.29108 | 1 |
DC3000/delta hrp 24h | 1.27883 | 0.264 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 2.08581 | |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.1045 | 1 |
Var 0h | 1.12085 | 0.263 |
Var 12h I row2-row1 | 1.04422 | 1 |
Var 12h NI row2-row1 | 1.49539 | 0.649 |
Var 36h I row2-row1 | 0.95967 | 1 |
Var 36h NI row2-row1 | 0.07199 | |
Var 60h I row2-row1 | 1.22702 | 1 |
Var 60h NI row2-row1 | 0.93601 | 1 |
Time course 0hI-0hNI | 1.06788 | 1 |
Time course 12hI-12hNI | 1.44198 | 0.308 |
Time course 36hI-36hNI | 1.71035 | 0.014 |
Time course 60hI-60hNI | 1.38255 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.64773 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 0.63009 | 0.485 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98154 | 0.552 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.04013 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.45965 | 0.083 |
Manapal/WT (break) | 0.99574 | 1 |
Manapal/WT (red) | 0.77769 | 0.183 |
|
|