Expression of 1-1-6.1.18.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.992060.919
27DAP/17DAP1.196540.809
39DAP/27DAP0.872860.641
41DAP/39DAP0.946880.824
42DAP/41DAP1.061730.999
43DAP/42DAP1.235560.864
47DAP/43DAP1.359040.769
52DAP/47DAP1.106770.898
57DAP/52DAP1.269490.993

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.240740.089
17DAP/reference1.314280.077
27DAP/reference1.130410.143
39DAP/reference0.888690.24
41DAP/reference0.976190.667
42DAP/reference1.040830.628
43DAP/reference1.177730.064
47DAP/reference0.94170.418
52DAP/reference1.246550.524
57DAP/reference0.886110.21

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.365980.5
27DAP/17DAP1.253570.429
39DAP/27DAP1.002590.775
41DAP/39DAP1.103970.79
42DAP/41DAP0.88130.279
43DAP/42DAP1.355990.25
47DAP/43DAP1.096980.822
52DAP/47DAP1.070450.933
57DAP/52DAP1.033380.907
57DAP/7DAP1.352491

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.091260.524
17DAP/reference1.068170.18
27DAP/reference1.12850.131
39DAP/reference1.136110.033
41DAP/reference1.10310.363
42DAP/reference1.149340.534
43DAP/reference1.125920.537
47DAP/reference1.268860.337
52DAP/reference0.94810.213
57DAP/reference1.02611

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.783340.362
17DAP/reference1.201450.873
27DAP/reference0.61369
39DAP/reference1.42780.424
41DAP/reference0.679760.068
42DAP/reference1.026091
43DAP/reference1.055340.721
47DAP/reference0.880810.302
52DAP/reference1.133720.322
57DAP/reference1.938490.177

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.073810.172
17DAP/reference1.133670.283
27DAP/reference0.977340.539
39DAP/reference1.115690.613
41DAP/reference1.063420.239
42DAP/reference1.212680.091
43DAP/reference1.057720.432
47DAP/reference1.064971
52DAP/reference1.170150.349
57DAP/reference1.4682

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.96511
26DAP/20DAP0.766281
34DAP/26DAP1.113971
51DAP/34DAP1.183520.706
52DAP/51DAP1.016891
53DAP/52DAP0.619580.402
55DAP/53DAP1.263970.104
57DAP/55DAP1.03920.969
62DAP/57DAP0.965490.994
68DAP/62DAP0.849570.505
68DAP/14DAP0.830080.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.995360.774

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M820.35917
5-3/M821.00689
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.166990.277
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.391231
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.90917
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.178020.222

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.018531
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.291081
DC3000/delta hrp 24h1.278830.264

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.08581
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.10451
Var 0h1.120850.263
Var 12h I row2-row11.044221
Var 12h NI row2-row11.495390.649
Var 36h I row2-row10.959671
Var 36h NI row2-row10.07199
Var 60h I row2-row11.227021
Var 60h NI row2-row10.936011
Time course 0hI-0hNI1.067881
Time course 12hI-12hNI1.441980.308
Time course 36hI-36hNI1.710350.014
Time course 60hI-60hNI1.382550.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.647730.722
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.630090.485

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.981540.552

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.040131

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.459650.083
Manapal/WT (break)0.995741
Manapal/WT (red)0.777690.183