Expression of 1-1-6.1.18.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02983 | 0.975 |
27DAP/17DAP | 1.27568 | 0.845 |
39DAP/27DAP | 0.97655 | 0.749 |
41DAP/39DAP | 0.72793 | 0.145 |
42DAP/41DAP | 1.01825 | 1 |
43DAP/42DAP | 1.04822 | 1 |
47DAP/43DAP | 1.10007 | 0.49 |
52DAP/47DAP | 1.20733 | 0.545 |
57DAP/52DAP | 1.07326 | 0.963 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12838 | 0.384 |
17DAP/reference | 0.7413 | 0.021 |
27DAP/reference | 0.81462 | 0.089 |
39DAP/reference | 0.74925 | 0.085 |
41DAP/reference | 0.66405 | 0.026 |
42DAP/reference | 1.76935 | 0.001 |
43DAP/reference | 1.24599 | 0.023 |
47DAP/reference | 1.23622 | 0.004 |
52DAP/reference | 1.01103 | 0.668 |
57DAP/reference | 1.08195 | 0.366 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99655 | 0.826 |
27DAP/17DAP | 1.0658 | 0.751 |
39DAP/27DAP | 0.94733 | 0.572 |
41DAP/39DAP | 1.08259 | 0.773 |
42DAP/41DAP | 1.02681 | 0.81 |
43DAP/42DAP | 0.87201 | 0.054 |
47DAP/43DAP | 0.98042 | 0.877 |
52DAP/47DAP | 0.98104 | 0.902 |
57DAP/52DAP | 1.12534 | 0.543 |
57DAP/7DAP | 1.09112 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04284 | 1 |
17DAP/reference | 0.92493 | 0.253 |
27DAP/reference | 0.90321 | 0.159 |
39DAP/reference | 0.87794 | 0.17 |
41DAP/reference | 0.85237 | 0.146 |
42DAP/reference | 0.90118 | 0.222 |
43DAP/reference | 0.97537 | 0.48 |
47DAP/reference | 1.30342 | 0.158 |
52DAP/reference | 0.813 | 0.023 |
57DAP/reference | 0.92573 | 0.291 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22133 | 0.289 |
17DAP/reference | 1.20736 | 0.203 |
27DAP/reference | 1.59093 | 0.04 |
39DAP/reference | 1.19797 | 0.424 |
41DAP/reference | 1.36458 | 0.037 |
42DAP/reference | 1.21716 | 0.012 |
43DAP/reference | 0.89446 | 0.307 |
47DAP/reference | 0.85747 | 0.025 |
52DAP/reference | 0.66103 | 0.004 |
57DAP/reference | 0.67201 | 0.005 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98246 | 0.607 |
17DAP/reference | 0.86374 | 0.092 |
27DAP/reference | 0.90083 | 0.218 |
39DAP/reference | 0.9896 | 0.693 |
41DAP/reference | 0.95622 | 0.417 |
42DAP/reference | 1.13915 | 1 |
43DAP/reference | 1.88125 | 0.25 |
47DAP/reference | 1.0608 | 1 |
52DAP/reference | 1.3148 | 0.172 |
57DAP/reference | 1.33361 | 0.171 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.944 | 0.966 |
26DAP/20DAP | 1.00718 | 1 |
34DAP/26DAP | 0.93412 | 0.834 |
51DAP/34DAP | 1.38737 | 0.121 |
52DAP/51DAP | 1.21318 | 0.121 |
53DAP/52DAP | 1.29512 | 0.038 |
55DAP/53DAP | 0.91051 | 0.252 |
57DAP/55DAP | 0.93534 | 0.684 |
62DAP/57DAP | 0.70666 | 0.003 |
68DAP/62DAP | 1.16841 | 0.767 |
68DAP/14DAP | 1.05408 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.24319 | 0.212 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.72979 | 0.203 |
Mature Green Tomato/Ripe Tomato | 0.90357 | 0.377 |
Immature Eggplant/Mature Eggplant | 1.16342 | 0.116 |
Ripe Pepper/Ripe Tomato | 0.72143 | 1 |
Mature Eggplant/Ripe Tomato | 0.47121 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05869 | 1 |
1-1-2/M82 | 1.02314 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.96618 | 1 |
1-3/M82 | 1.43497 | |
2-1-1/M82 | 0.86176 | |
2-1/M82 | 1.76518 | |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.35549 | |
4-1/M82 | 1.16722 | 1 |
4-3-2/M82 | 0.99902 | |
4-3/M82 | 1.12298 | 1 |
5-3/M82 | 0.94631 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.09778 | 1 |
7-1/M82 | 1.17313 | |
7-2/M82 | 0.982 | |
9-3-2/M82 | 1.24717 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.98549 | |
IL2-6/WTpooled | 1.08676 | |
IL7-5/WTpooled | 1.06875 | |
IL7-3/WTpooled | 1.15097 | 1 |
IL12-4/WTpooled | 1.13596 | 0.785 |
IL1-4/WTpooled | 0.8643 | |
WT/WTpooled | 0.97587 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.44777 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95885 | 1 |
DC3000/delta hrp 6h | 0.87762 | 0.95 |
DC3000/delta hrp 12h | 1.37886 | 1 |
DC3000/delta hrp 24h | 1.14761 | 0.553 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.15188 | 0.16 |
DC3000 delta B/DC3000 delta AB | 1.20401 | 0.156 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.23059 | 0.254 |
Exp 36h | 1.12214 | 1 |
Exp 60h | 1.21946 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01413 | 1 |
Var 0h | 1.00512 | 1 |
Var 12h I row2-row1 | 0.85924 | 0.338 |
Var 12h NI row2-row1 | 0.95342 | 0.906 |
Var 36h I row2-row1 | 1.03823 | 1 |
Var 36h NI row2-row1 | 0.94736 | 0.549 |
Var 60h I row2-row1 | 0.88257 | 0.293 |
Var 60h NI row2-row1 | 0.8835 | 0.572 |
Time course 0hI-0hNI | 1.03853 | 0.833 |
Time course 12hI-12hNI | 1.04682 | 0.779 |
Time course 36hI-36hNI | 1.17256 | 0.016 |
Time course 60hI-60hNI | 1.49269 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.19254 | 0.297 |
transgenic ySAMdc/azygous control (breaker) | 0.83819 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.97554 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.22242 | 0.089 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.68229 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.22003 | 0.14 |
Manapal/WT (break) | 1.21758 | 0.381 |
Manapal/WT (red) | 1.01953 | 1 |
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