Expression of 1-1-6.1.18.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.88440.364
27DAP/17DAP1.214570.801
39DAP/27DAP0.963560.682
41DAP/39DAP1.126020.372
42DAP/41DAP0.944011
43DAP/42DAP1.319910.864
47DAP/43DAP0.860040.555
52DAP/47DAP1.146790.832
57DAP/52DAP0.825790.899

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.90610.101
17DAP/reference1.030080.412
27DAP/reference0.949280.257
39DAP/reference1.073990.403
41DAP/reference1.066060.516
42DAP/reference1.17360.004
43DAP/reference1.35020.007
47DAP/reference1.233540.085
52DAP/reference0.890520.152
57DAP/reference0.911820.221

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.245591
27DAP/17DAP1.456660.204
39DAP/27DAP1.169650.383
41DAP/39DAP1.050440.853
42DAP/41DAP1.263390.425
43DAP/42DAP1.288760.212
47DAP/43DAP0.871510.188
52DAP/47DAP1.101330.973
57DAP/52DAP0.939250.617
57DAP/7DAP0.977351

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.028790.843
17DAP/reference1.231160.07
27DAP/reference1.131220.371
39DAP/reference1.07050.74
41DAP/reference1.227170.26
42DAP/reference1.405540.037
43DAP/reference1.129930.06
47DAP/reference1.25750.036
52DAP/reference1.107550.055
57DAP/reference1.55040.009

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.993980.884
17DAP/reference0.88690.062
27DAP/reference0.844840.058
39DAP/reference0.79860.014
41DAP/reference0.76340.012
42DAP/reference0.952860.392
43DAP/reference0.901090.269
47DAP/reference0.88420.014
52DAP/reference0.890810.034
57DAP/reference1.02070.887

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.875810.23
17DAP/reference0.985960.709
27DAP/reference1.291680.035
39DAP/reference1.052260.711
41DAP/reference1.135350.15
42DAP/reference1.13890.214
43DAP/reference0.968430.545
47DAP/reference1.549520.011
52DAP/reference1.077770.534
57DAP/reference0.639640.019

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.022410.966
26DAP/20DAP1.392890.608
34DAP/26DAP0.992890.98
51DAP/34DAP0.844580.458
52DAP/51DAP1.259560.776
53DAP/52DAP0.781980.311
55DAP/53DAP1.232570.982
57DAP/55DAP1.024640.825
62DAP/57DAP1.310710.622
68DAP/62DAP1.258020.448
68DAP/14DAP1.306490.594

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.0681

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.833560.29
Mature Green Tomato/Ripe Tomato1.049251
Immature Eggplant/Mature Eggplant0.894080.111
Ripe Pepper/Ripe Tomato0.973871
Mature Eggplant/Ripe Tomato0.678580.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.333840.536
1-1-2/M820.96021
12-2/M821.049081
12-4/M821.207511
1-3/M821.24220.277
2-1-1/M821.382280.689
2-1/M820.936141
2-6/M821.174470.695
3-2/M821.11171
4-1-1/M820.87155
4-1/M820.98712
4-3-2/M821.66585
4-3/M821.678650.268
5-3/M820.749550.395
6-2/M821.83340.235
6-3/M821.163661
7-1/M820.863470.452
7-2/M821.149691
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.97978
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.165130.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.947651
DC3000/delta hrp 6h0.942680.95
DC3000/delta hrp 12h1.063011
DC3000/delta hrp 24h1.106590.502

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.807231
Exp 36h1.033611
Exp 60h0.921660.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.066141
Var 0h1.188810.936
Var 12h I row2-row11.229320.736
Var 12h NI row2-row11.060041
Var 36h I row2-row10.993041
Var 36h NI row2-row10.826990.706
Var 60h I row2-row10.865420.832
Var 60h NI row2-row10.939931
Time course 0hI-0hNI0.868651
Time course 12hI-12hNI0.810160.705
Time course 36hI-36hNI1.135540.401
Time course 60hI-60hNI1.867620.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.898910.229
transgenic ySAMdc/azygous control (breaker)0.948071
transgenic ySAMdc/azygous control (red)0.91891

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.990290.568

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.124970.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.158871
Manapal/WT (break)1.246781
Manapal/WT (red)0.759790.181