Expression of 1-1-6.1.18.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.8844 | 0.364 |
27DAP/17DAP | 1.21457 | 0.801 |
39DAP/27DAP | 0.96356 | 0.682 |
41DAP/39DAP | 1.12602 | 0.372 |
42DAP/41DAP | 0.94401 | 1 |
43DAP/42DAP | 1.31991 | 0.864 |
47DAP/43DAP | 0.86004 | 0.555 |
52DAP/47DAP | 1.14679 | 0.832 |
57DAP/52DAP | 0.82579 | 0.899 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9061 | 0.101 |
17DAP/reference | 1.03008 | 0.412 |
27DAP/reference | 0.94928 | 0.257 |
39DAP/reference | 1.07399 | 0.403 |
41DAP/reference | 1.06606 | 0.516 |
42DAP/reference | 1.1736 | 0.004 |
43DAP/reference | 1.3502 | 0.007 |
47DAP/reference | 1.23354 | 0.085 |
52DAP/reference | 0.89052 | 0.152 |
57DAP/reference | 0.91182 | 0.221 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.24559 | 1 |
27DAP/17DAP | 1.45666 | 0.204 |
39DAP/27DAP | 1.16965 | 0.383 |
41DAP/39DAP | 1.05044 | 0.853 |
42DAP/41DAP | 1.26339 | 0.425 |
43DAP/42DAP | 1.28876 | 0.212 |
47DAP/43DAP | 0.87151 | 0.188 |
52DAP/47DAP | 1.10133 | 0.973 |
57DAP/52DAP | 0.93925 | 0.617 |
57DAP/7DAP | 0.97735 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02879 | 0.843 |
17DAP/reference | 1.23116 | 0.07 |
27DAP/reference | 1.13122 | 0.371 |
39DAP/reference | 1.0705 | 0.74 |
41DAP/reference | 1.22717 | 0.26 |
42DAP/reference | 1.40554 | 0.037 |
43DAP/reference | 1.12993 | 0.06 |
47DAP/reference | 1.2575 | 0.036 |
52DAP/reference | 1.10755 | 0.055 |
57DAP/reference | 1.5504 | 0.009 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99398 | 0.884 |
17DAP/reference | 0.8869 | 0.062 |
27DAP/reference | 0.84484 | 0.058 |
39DAP/reference | 0.7986 | 0.014 |
41DAP/reference | 0.7634 | 0.012 |
42DAP/reference | 0.95286 | 0.392 |
43DAP/reference | 0.90109 | 0.269 |
47DAP/reference | 0.8842 | 0.014 |
52DAP/reference | 0.89081 | 0.034 |
57DAP/reference | 1.0207 | 0.887 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87581 | 0.23 |
17DAP/reference | 0.98596 | 0.709 |
27DAP/reference | 1.29168 | 0.035 |
39DAP/reference | 1.05226 | 0.711 |
41DAP/reference | 1.13535 | 0.15 |
42DAP/reference | 1.1389 | 0.214 |
43DAP/reference | 0.96843 | 0.545 |
47DAP/reference | 1.54952 | 0.011 |
52DAP/reference | 1.07777 | 0.534 |
57DAP/reference | 0.63964 | 0.019 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02241 | 0.966 |
26DAP/20DAP | 1.39289 | 0.608 |
34DAP/26DAP | 0.99289 | 0.98 |
51DAP/34DAP | 0.84458 | 0.458 |
52DAP/51DAP | 1.25956 | 0.776 |
53DAP/52DAP | 0.78198 | 0.311 |
55DAP/53DAP | 1.23257 | 0.982 |
57DAP/55DAP | 1.02464 | 0.825 |
62DAP/57DAP | 1.31071 | 0.622 |
68DAP/62DAP | 1.25802 | 0.448 |
68DAP/14DAP | 1.30649 | 0.594 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.068 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.83356 | 0.29 |
Mature Green Tomato/Ripe Tomato | 1.04925 | 1 |
Immature Eggplant/Mature Eggplant | 0.89408 | 0.111 |
Ripe Pepper/Ripe Tomato | 0.97387 | 1 |
Mature Eggplant/Ripe Tomato | 0.67858 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.33384 | 0.536 |
1-1-2/M82 | 0.9602 | 1 |
12-2/M82 | 1.04908 | 1 |
12-4/M82 | 1.20751 | 1 |
1-3/M82 | 1.2422 | 0.277 |
2-1-1/M82 | 1.38228 | 0.689 |
2-1/M82 | 0.93614 | 1 |
2-6/M82 | 1.17447 | 0.695 |
3-2/M82 | 1.11171 | |
4-1-1/M82 | 0.87155 | |
4-1/M82 | 0.98712 | |
4-3-2/M82 | 1.66585 | |
4-3/M82 | 1.67865 | 0.268 |
5-3/M82 | 0.74955 | 0.395 |
6-2/M82 | 1.8334 | 0.235 |
6-3/M82 | 1.16366 | 1 |
7-1/M82 | 0.86347 | 0.452 |
7-2/M82 | 1.14969 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.97978 | |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.16513 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94765 | 1 |
DC3000/delta hrp 6h | 0.94268 | 0.95 |
DC3000/delta hrp 12h | 1.06301 | 1 |
DC3000/delta hrp 24h | 1.10659 | 0.502 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.80723 | 1 |
Exp 36h | 1.03361 | 1 |
Exp 60h | 0.92166 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.06614 | 1 |
Var 0h | 1.18881 | 0.936 |
Var 12h I row2-row1 | 1.22932 | 0.736 |
Var 12h NI row2-row1 | 1.06004 | 1 |
Var 36h I row2-row1 | 0.99304 | 1 |
Var 36h NI row2-row1 | 0.82699 | 0.706 |
Var 60h I row2-row1 | 0.86542 | 0.832 |
Var 60h NI row2-row1 | 0.93993 | 1 |
Time course 0hI-0hNI | 0.86865 | 1 |
Time course 12hI-12hNI | 0.81016 | 0.705 |
Time course 36hI-36hNI | 1.13554 | 0.401 |
Time course 60hI-60hNI | 1.86762 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.89891 | 0.229 |
transgenic ySAMdc/azygous control (breaker) | 0.94807 | 1 |
transgenic ySAMdc/azygous control (red) | 0.9189 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99029 | 0.568 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.12497 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.15887 | 1 |
Manapal/WT (break) | 1.24678 | 1 |
Manapal/WT (red) | 0.75979 | 0.181 |
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