Tomato Functional Genomics Database (TFGD)

Expression of 1-1-6.1.18.9

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.8844	0.364
27DAP/17DAP	1.21457	0.801
39DAP/27DAP	0.96356	0.682
41DAP/39DAP	1.12602	0.372
42DAP/41DAP	0.94401	1
43DAP/42DAP	1.31991	0.864
47DAP/43DAP	0.86004	0.555
52DAP/47DAP	1.14679	0.832
57DAP/52DAP	0.82579	0.899

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.9061	0.101
17DAP/reference	1.03008	0.412
27DAP/reference	0.94928	0.257
39DAP/reference	1.07399	0.403
41DAP/reference	1.06606	0.516
42DAP/reference	1.1736	0.004
43DAP/reference	1.3502	0.007
47DAP/reference	1.23354	0.085
52DAP/reference	0.89052	0.152
57DAP/reference	0.91182	0.221

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.24559	1
27DAP/17DAP	1.45666	0.204
39DAP/27DAP	1.16965	0.383
41DAP/39DAP	1.05044	0.853
42DAP/41DAP	1.26339	0.425
43DAP/42DAP	1.28876	0.212
47DAP/43DAP	0.87151	0.188
52DAP/47DAP	1.10133	0.973
57DAP/52DAP	0.93925	0.617
57DAP/7DAP	0.97735	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.02879	0.843
17DAP/reference	1.23116	0.07
27DAP/reference	1.13122	0.371
39DAP/reference	1.0705	0.74
41DAP/reference	1.22717	0.26
42DAP/reference	1.40554	0.037
43DAP/reference	1.12993	0.06
47DAP/reference	1.2575	0.036
52DAP/reference	1.10755	0.055
57DAP/reference	1.5504	0.009

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.99398	0.884
17DAP/reference	0.8869	0.062
27DAP/reference	0.84484	0.058
39DAP/reference	0.7986	0.014
41DAP/reference	0.7634	0.012
42DAP/reference	0.95286	0.392
43DAP/reference	0.90109	0.269
47DAP/reference	0.8842	0.014
52DAP/reference	0.89081	0.034
57DAP/reference	1.0207	0.887

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.87581	0.23
17DAP/reference	0.98596	0.709
27DAP/reference	1.29168	0.035
39DAP/reference	1.05226	0.711
41DAP/reference	1.13535	0.15
42DAP/reference	1.1389	0.214
43DAP/reference	0.96843	0.545
47DAP/reference	1.54952	0.011
52DAP/reference	1.07777	0.534
57DAP/reference	0.63964	0.019

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.02241	0.966
26DAP/20DAP	1.39289	0.608
34DAP/26DAP	0.99289	0.98
51DAP/34DAP	0.84458	0.458
52DAP/51DAP	1.25956	0.776
53DAP/52DAP	0.78198	0.311
55DAP/53DAP	1.23257	0.982
57DAP/55DAP	1.02464	0.825
62DAP/57DAP	1.31071	0.622
68DAP/62DAP	1.25802	0.448
68DAP/14DAP	1.30649	0.594

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.068	1

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	0.83356	0.29
Mature Green Tomato/Ripe Tomato	1.04925	1
Immature Eggplant/Mature Eggplant	0.89408	0.111
Ripe Pepper/Ripe Tomato	0.97387	1
Mature Eggplant/Ripe Tomato	0.67858	0.234

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	1.33384	0.536
1-1-2/M82	0.9602	1
12-2/M82	1.04908	1
12-4/M82	1.20751	1
1-3/M82	1.2422	0.277
2-1-1/M82	1.38228	0.689
2-1/M82	0.93614	1
2-6/M82	1.17447	0.695
3-2/M82	1.11171
4-1-1/M82	0.87155
4-1/M82	0.98712
4-3-2/M82	1.66585
4-3/M82	1.67865	0.268
5-3/M82	0.74955	0.395
6-2/M82	1.8334	0.235
6-3/M82	1.16366	1
7-1/M82	0.86347	0.452
7-2/M82	1.14969	1
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	N/A	N/A
IL12-4/WTpooled	0.97978
IL1-4/WTpooled	N/A	N/A
WT/WTpooled	N/A	N/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.16513	0.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.94765	1
DC3000/delta hrp 6h	0.94268	0.95
DC3000/delta hrp 12h	1.06301	1
DC3000/delta hrp 24h	1.10659	0.502

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	0.80723	1
Exp 36h	1.03361	1
Exp 60h	0.92166	0.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.06614	1
Var 0h	1.18881	0.936
Var 12h I row2-row1	1.22932	0.736
Var 12h NI row2-row1	1.06004	1
Var 36h I row2-row1	0.99304	1
Var 36h NI row2-row1	0.82699	0.706
Var 60h I row2-row1	0.86542	0.832
Var 60h NI row2-row1	0.93993	1
Time course 0hI-0hNI	0.86865	1
Time course 12hI-12hNI	0.81016	0.705
Time course 36hI-36hNI	1.13554	0.401
Time course 60hI-60hNI	1.86762	0.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.89891	0.229
transgenic ySAMdc/azygous control (breaker)	0.94807	1
transgenic ySAMdc/azygous control (red)	0.9189	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	0.99029	0.568

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.12497	0.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.15887	1
Manapal/WT (break)	1.24678	1
Manapal/WT (red)	0.75979	0.181