Expression of 1-1-6.1.19.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.819310.226
27DAP/17DAP1.137730.88
39DAP/27DAP0.889090.549
41DAP/39DAP1.291750.392
42DAP/41DAP1.06571
43DAP/42DAP1.001370.937
47DAP/43DAP1.239360.538
52DAP/47DAP1.058670.953
57DAP/52DAP1.015921

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.899760.194
17DAP/reference0.734670.053
27DAP/reference0.77370.208
39DAP/reference0.976360.797
41DAP/reference0.667380.026
42DAP/reference0.862680.04
43DAP/reference0.71199
47DAP/reference0.840520.083
52DAP/reference0.969510.36
57DAP/reference1.12635

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.162230.662
27DAP/17DAP1.022890.957
39DAP/27DAP0.997151
41DAP/39DAP1.339510.112
42DAP/41DAP0.864260.245
43DAP/42DAP0.983440.854
47DAP/43DAP1.055060.678
52DAP/47DAP0.933390.777
57DAP/52DAP1.262860.106
57DAP/7DAP1.09251

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.972890.495
17DAP/reference0.891670.072
27DAP/reference0.975440.43
39DAP/reference1.183650.069
41DAP/reference0.926470.298
42DAP/reference1.024920.889
43DAP/reference1.057680.83
47DAP/reference1.043381
52DAP/reference0.934720.196
57DAP/reference0.813570.016

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.870980.152
17DAP/reference0.92870.297
27DAP/reference0.96430.467
39DAP/reference1.068140.868
41DAP/reference1.071120.48
42DAP/reference0.983340.594
43DAP/reference0.844790.157
47DAP/reference0.854390.049
52DAP/reference1.074890.498
57DAP/reference0.820520.024

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.921310.119
17DAP/reference0.943010.398
27DAP/reference0.94930.184
39DAP/reference0.983280.643
41DAP/reference0.994230.682
42DAP/reference1.163310.272
43DAP/reference1.213320.349
47DAP/reference1.021651
52DAP/reference1.101870.735
57DAP/reference1.552170.022

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.250.966
26DAP/20DAP0.892041
34DAP/26DAP1.434350.819
51DAP/34DAP0.926220.698
52DAP/51DAP1.009750.965
53DAP/52DAP1.09640.91
55DAP/53DAP1.186370.599
57DAP/55DAP0.989360.888
62DAP/57DAP1.156540.393
68DAP/62DAP1.748460.153
68DAP/14DAP2.80170.022

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.355230.162

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.458370.063
Mature Green Tomato/Ripe Tomato1.193931
Immature Eggplant/Mature Eggplant0.56620.063
Ripe Pepper/Ripe Tomato0.685821
Mature Eggplant/Ripe Tomato0.94211

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.067840.536
1-1-2/M821.104351
12-2/M821.010011
12-4/M821.108071
1-3/M821.394630.248
2-1-1/M820.932990.683
2-1/M820.645220.322
2-6/M820.989121
3-2/M821.24927
4-1-1/M821.000371
4-1/M821.00949
4-3-2/M821.14955
4-3/M821.322911
5-3/M821.124831
6-2/M820.938281
6-3/M820.982731
7-1/M820.974270.803
7-2/M821.096320.299
9-3-2/M821.11021

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.942121
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.869021
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.983331
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.907660.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.036060.921
DC3000/delta hrp 6h0.957970.95
DC3000/delta hrp 12h1.00771
DC3000/delta hrp 24h0.962840.692

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.793390.293
DC3000 delta B/DC3000 delta AB0.819930.21

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.935871
Exp 36h0.681810.374
Exp 60h0.711610.386

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.061331
Var 0h0.981641
Var 12h I row2-row10.990991
Var 12h NI row2-row11.013511
Var 36h I row2-row11.017531
Var 36h NI row2-row10.893670.645
Var 60h I row2-row10.839280.582
Var 60h NI row2-row10.947190.818
Time course 0hI-0hNI1.090010.764
Time course 12hI-12hNI0.938720.497
Time course 36hI-36hNI0.931020.134
Time course 60hI-60hNI0.861610.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.11720.326
transgenic ySAMdc/azygous control (breaker)1.006031
transgenic ySAMdc/azygous control (red)1.066140.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.876640.049

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.79130.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.961281
Manapal/WT (break)1.250170.123
Manapal/WT (red)1.069691