Expression of 1-1-6.1.19.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.81931 | 0.226 |
27DAP/17DAP | 1.13773 | 0.88 |
39DAP/27DAP | 0.88909 | 0.549 |
41DAP/39DAP | 1.29175 | 0.392 |
42DAP/41DAP | 1.0657 | 1 |
43DAP/42DAP | 1.00137 | 0.937 |
47DAP/43DAP | 1.23936 | 0.538 |
52DAP/47DAP | 1.05867 | 0.953 |
57DAP/52DAP | 1.01592 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89976 | 0.194 |
17DAP/reference | 0.73467 | 0.053 |
27DAP/reference | 0.7737 | 0.208 |
39DAP/reference | 0.97636 | 0.797 |
41DAP/reference | 0.66738 | 0.026 |
42DAP/reference | 0.86268 | 0.04 |
43DAP/reference | 0.71199 | |
47DAP/reference | 0.84052 | 0.083 |
52DAP/reference | 0.96951 | 0.36 |
57DAP/reference | 1.12635 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16223 | 0.662 |
27DAP/17DAP | 1.02289 | 0.957 |
39DAP/27DAP | 0.99715 | 1 |
41DAP/39DAP | 1.33951 | 0.112 |
42DAP/41DAP | 0.86426 | 0.245 |
43DAP/42DAP | 0.98344 | 0.854 |
47DAP/43DAP | 1.05506 | 0.678 |
52DAP/47DAP | 0.93339 | 0.777 |
57DAP/52DAP | 1.26286 | 0.106 |
57DAP/7DAP | 1.0925 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97289 | 0.495 |
17DAP/reference | 0.89167 | 0.072 |
27DAP/reference | 0.97544 | 0.43 |
39DAP/reference | 1.18365 | 0.069 |
41DAP/reference | 0.92647 | 0.298 |
42DAP/reference | 1.02492 | 0.889 |
43DAP/reference | 1.05768 | 0.83 |
47DAP/reference | 1.04338 | 1 |
52DAP/reference | 0.93472 | 0.196 |
57DAP/reference | 0.81357 | 0.016 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87098 | 0.152 |
17DAP/reference | 0.9287 | 0.297 |
27DAP/reference | 0.9643 | 0.467 |
39DAP/reference | 1.06814 | 0.868 |
41DAP/reference | 1.07112 | 0.48 |
42DAP/reference | 0.98334 | 0.594 |
43DAP/reference | 0.84479 | 0.157 |
47DAP/reference | 0.85439 | 0.049 |
52DAP/reference | 1.07489 | 0.498 |
57DAP/reference | 0.82052 | 0.024 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92131 | 0.119 |
17DAP/reference | 0.94301 | 0.398 |
27DAP/reference | 0.9493 | 0.184 |
39DAP/reference | 0.98328 | 0.643 |
41DAP/reference | 0.99423 | 0.682 |
42DAP/reference | 1.16331 | 0.272 |
43DAP/reference | 1.21332 | 0.349 |
47DAP/reference | 1.02165 | 1 |
52DAP/reference | 1.10187 | 0.735 |
57DAP/reference | 1.55217 | 0.022 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.25 | 0.966 |
26DAP/20DAP | 0.89204 | 1 |
34DAP/26DAP | 1.43435 | 0.819 |
51DAP/34DAP | 0.92622 | 0.698 |
52DAP/51DAP | 1.00975 | 0.965 |
53DAP/52DAP | 1.0964 | 0.91 |
55DAP/53DAP | 1.18637 | 0.599 |
57DAP/55DAP | 0.98936 | 0.888 |
62DAP/57DAP | 1.15654 | 0.393 |
68DAP/62DAP | 1.74846 | 0.153 |
68DAP/14DAP | 2.8017 | 0.022 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.35523 | 0.162 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.45837 | 0.063 |
Mature Green Tomato/Ripe Tomato | 1.19393 | 1 |
Immature Eggplant/Mature Eggplant | 0.5662 | 0.063 |
Ripe Pepper/Ripe Tomato | 0.68582 | 1 |
Mature Eggplant/Ripe Tomato | 0.9421 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.06784 | 0.536 |
1-1-2/M82 | 1.10435 | 1 |
12-2/M82 | 1.01001 | 1 |
12-4/M82 | 1.10807 | 1 |
1-3/M82 | 1.39463 | 0.248 |
2-1-1/M82 | 0.93299 | 0.683 |
2-1/M82 | 0.64522 | 0.322 |
2-6/M82 | 0.98912 | 1 |
3-2/M82 | 1.24927 | |
4-1-1/M82 | 1.00037 | 1 |
4-1/M82 | 1.00949 | |
4-3-2/M82 | 1.14955 | |
4-3/M82 | 1.32291 | 1 |
5-3/M82 | 1.12483 | 1 |
6-2/M82 | 0.93828 | 1 |
6-3/M82 | 0.98273 | 1 |
7-1/M82 | 0.97427 | 0.803 |
7-2/M82 | 1.09632 | 0.299 |
9-3-2/M82 | 1.1102 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.94212 | 1 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.86902 | 1 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.98333 | 1 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.90766 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03606 | 0.921 |
DC3000/delta hrp 6h | 0.95797 | 0.95 |
DC3000/delta hrp 12h | 1.0077 | 1 |
DC3000/delta hrp 24h | 0.96284 | 0.692 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.79339 | 0.293 |
DC3000 delta B/DC3000 delta AB | 0.81993 | 0.21 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.93587 | 1 |
Exp 36h | 0.68181 | 0.374 |
Exp 60h | 0.71161 | 0.386 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.06133 | 1 |
Var 0h | 0.98164 | 1 |
Var 12h I row2-row1 | 0.99099 | 1 |
Var 12h NI row2-row1 | 1.01351 | 1 |
Var 36h I row2-row1 | 1.01753 | 1 |
Var 36h NI row2-row1 | 0.89367 | 0.645 |
Var 60h I row2-row1 | 0.83928 | 0.582 |
Var 60h NI row2-row1 | 0.94719 | 0.818 |
Time course 0hI-0hNI | 1.09001 | 0.764 |
Time course 12hI-12hNI | 0.93872 | 0.497 |
Time course 36hI-36hNI | 0.93102 | 0.134 |
Time course 60hI-60hNI | 0.86161 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.1172 | 0.326 |
transgenic ySAMdc/azygous control (breaker) | 1.00603 | 1 |
transgenic ySAMdc/azygous control (red) | 1.06614 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.87664 | 0.049 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.7913 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.96128 | 1 |
Manapal/WT (break) | 1.25017 | 0.123 |
Manapal/WT (red) | 1.06969 | 1 |
|
|