Expression of 1-1-6.1.19.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16655 | 0.709 |
27DAP/17DAP | 1.7573 | 0.772 |
39DAP/27DAP | 1.15259 | 1 |
41DAP/39DAP | 1.05591 | 0.922 |
42DAP/41DAP | 1.05355 | 1 |
43DAP/42DAP | 1.02108 | 0.94 |
47DAP/43DAP | 1.18567 | 0.733 |
52DAP/47DAP | 0.91945 | 0.736 |
57DAP/52DAP | 1.07748 | 0.996 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99734 | 0.707 |
17DAP/reference | 1.01731 | 0.843 |
27DAP/reference | 0.9858 | 0.741 |
39DAP/reference | 1.0161 | 1 |
41DAP/reference | 0.90313 | 0.085 |
42DAP/reference | 1.16989 | 0.219 |
43DAP/reference | 1.09422 | 0.678 |
47DAP/reference | 1.14219 | 0.105 |
52DAP/reference | 1.01783 | 0.689 |
57DAP/reference | 1.03614 | 0.582 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10813 | 0.687 |
27DAP/17DAP | 1.00254 | 1 |
39DAP/27DAP | 0.94007 | 0.502 |
41DAP/39DAP | 1.01586 | 0.88 |
42DAP/41DAP | 1.03379 | 0.879 |
43DAP/42DAP | 0.94224 | 0.137 |
47DAP/43DAP | 0.99602 | 0.99 |
52DAP/47DAP | 1.02472 | 0.915 |
57DAP/52DAP | 1.00714 | 1 |
57DAP/7DAP | 0.93316 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00399 | 0.758 |
17DAP/reference | 0.80517 | 0.039 |
27DAP/reference | 0.87988 | 0.033 |
39DAP/reference | 0.8538 | 0.031 |
41DAP/reference | 1.07469 | 0.43 |
42DAP/reference | 1.10678 | 0.534 |
43DAP/reference | 0.97514 | 0.459 |
47DAP/reference | 1.06742 | 0.632 |
52DAP/reference | 0.93611 | 0.163 |
57DAP/reference | 0.84256 | 0.123 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07178 | 0.943 |
17DAP/reference | 1.15324 | 0.191 |
27DAP/reference | 1.1497 | 0.139 |
39DAP/reference | 0.96042 | 0.37 |
41DAP/reference | 1.0312 | 0.683 |
42DAP/reference | 0.91308 | 0.135 |
43DAP/reference | 1.02437 | 1 |
47DAP/reference | 0.97825 | 0.5 |
52DAP/reference | 1.14629 | 0.528 |
57DAP/reference | 0.95032 | 0.488 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08381 | 0.162 |
17DAP/reference | 0.81482 | 0.231 |
27DAP/reference | 0.91348 | 0.27 |
39DAP/reference | 0.87986 | 0.111 |
41DAP/reference | 0.84741 | 0.096 |
42DAP/reference | 0.98868 | 0.671 |
43DAP/reference | 1.27469 | 0.022 |
47DAP/reference | 1.22737 | 0.042 |
52DAP/reference | 1.1721 | 0.664 |
57DAP/reference | 1.20858 | 0.098 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.66112 | 0.966 |
26DAP/20DAP | 0.92849 | |
34DAP/26DAP | 0.99389 | 1 |
51DAP/34DAP | 0.9467 | 0.618 |
52DAP/51DAP | 1.08907 | 0.467 |
53DAP/52DAP | 0.9597 | 0.811 |
55DAP/53DAP | 1.07114 | 0.813 |
57DAP/55DAP | 1.70189 | 0.682 |
62DAP/57DAP | 0.7154 | 0.466 |
68DAP/62DAP | 1.1097 | 0.549 |
68DAP/14DAP | 1.43625 | 0.084 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.01068 | 0.865 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.10053 | 0.523 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.69596 | 1 |
Mature Eggplant/Ripe Tomato | 0.60581 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.90581 | 1 |
12-2/M82 | 0.95464 | |
12-4/M82 | 0.91162 | 0.619 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.05934 | |
4-1-1/M82 | 0.90013 | |
4-1/M82 | 1.32142 | 0.853 |
4-3-2/M82 | 0.79868 | |
4-3/M82 | 0.87905 | 1 |
5-3/M82 | 1.17715 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.01454 | 1 |
7-1/M82 | 0.76079 | 0.452 |
7-2/M82 | 0.90836 | |
9-3-2/M82 | 1.06865 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.44699 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96286 | 1 |
DC3000/delta hrp 6h | 0.88701 | |
DC3000/delta hrp 12h | 0.78786 | 1 |
DC3000/delta hrp 24h | 0.79362 | 0.069 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.96483 | 0.691 |
DC3000 delta B/DC3000 delta AB | 1.00458 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 0.69609 | 0.217 |
Exp 60h | 1.05543 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99968 | 1 |
Var 0h | 1.08194 | 0.782 |
Var 12h I row2-row1 | 1.05448 | 0.443 |
Var 12h NI row2-row1 | 0.88082 | 0.466 |
Var 36h I row2-row1 | 0.97317 | 1 |
Var 36h NI row2-row1 | 0.94533 | 0.584 |
Var 60h I row2-row1 | 1.69566 | 1 |
Var 60h NI row2-row1 | 0.98907 | 1 |
Time course 0hI-0hNI | 0.95262 | 0.582 |
Time course 12hI-12hNI | 1.02685 | 0.818 |
Time course 36hI-36hNI | 1.01783 | 1 |
Time course 60hI-60hNI | 0.97469 | 0.646 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.54245 | 0.289 |
transgenic ySAMdc/azygous control (breaker) | 1.03275 | 1 |
transgenic ySAMdc/azygous control (red) | 1.52601 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.87873 | 0.186 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.92705 | 0.431 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.59863 | 1 |
Manapal/WT (red) | 0.95876 | 0.728 |
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