Expression of 1-1-6.1.19.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.166550.709
27DAP/17DAP1.75730.772
39DAP/27DAP1.152591
41DAP/39DAP1.055910.922
42DAP/41DAP1.053551
43DAP/42DAP1.021080.94
47DAP/43DAP1.185670.733
52DAP/47DAP0.919450.736
57DAP/52DAP1.077480.996

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.997340.707
17DAP/reference1.017310.843
27DAP/reference0.98580.741
39DAP/reference1.01611
41DAP/reference0.903130.085
42DAP/reference1.169890.219
43DAP/reference1.094220.678
47DAP/reference1.142190.105
52DAP/reference1.017830.689
57DAP/reference1.036140.582

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.108130.687
27DAP/17DAP1.002541
39DAP/27DAP0.940070.502
41DAP/39DAP1.015860.88
42DAP/41DAP1.033790.879
43DAP/42DAP0.942240.137
47DAP/43DAP0.996020.99
52DAP/47DAP1.024720.915
57DAP/52DAP1.007141
57DAP/7DAP0.933160.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.003990.758
17DAP/reference0.805170.039
27DAP/reference0.879880.033
39DAP/reference0.85380.031
41DAP/reference1.074690.43
42DAP/reference1.106780.534
43DAP/reference0.975140.459
47DAP/reference1.067420.632
52DAP/reference0.936110.163
57DAP/reference0.842560.123

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.071780.943
17DAP/reference1.153240.191
27DAP/reference1.14970.139
39DAP/reference0.960420.37
41DAP/reference1.03120.683
42DAP/reference0.913080.135
43DAP/reference1.024371
47DAP/reference0.978250.5
52DAP/reference1.146290.528
57DAP/reference0.950320.488

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.083810.162
17DAP/reference0.814820.231
27DAP/reference0.913480.27
39DAP/reference0.879860.111
41DAP/reference0.847410.096
42DAP/reference0.988680.671
43DAP/reference1.274690.022
47DAP/reference1.227370.042
52DAP/reference1.17210.664
57DAP/reference1.208580.098

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.661120.966
26DAP/20DAP0.92849
34DAP/26DAP0.993891
51DAP/34DAP0.94670.618
52DAP/51DAP1.089070.467
53DAP/52DAP0.95970.811
55DAP/53DAP1.071140.813
57DAP/55DAP1.701890.682
62DAP/57DAP0.71540.466
68DAP/62DAP1.10970.549
68DAP/14DAP1.436250.084

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.010680.865

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.100530.523
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.695961
Mature Eggplant/Ripe Tomato0.605811

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.905811
12-2/M820.95464
12-4/M820.911620.619
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.05934
4-1-1/M820.90013
4-1/M821.321420.853
4-3-2/M820.79868
4-3/M820.879051
5-3/M821.177151
6-2/M82N/AN/A
6-3/M821.014541
7-1/M820.760790.452
7-2/M820.90836
9-3-2/M821.068651

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.446990.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.962861
DC3000/delta hrp 6h0.88701
DC3000/delta hrp 12h0.787861
DC3000/delta hrp 24h0.793620.069

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.964830.691
DC3000 delta B/DC3000 delta AB1.004581

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h0.696090.217
Exp 60h1.055430.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.999681
Var 0h1.081940.782
Var 12h I row2-row11.054480.443
Var 12h NI row2-row10.880820.466
Var 36h I row2-row10.973171
Var 36h NI row2-row10.945330.584
Var 60h I row2-row11.695661
Var 60h NI row2-row10.989071
Time course 0hI-0hNI0.952620.582
Time course 12hI-12hNI1.026850.818
Time course 36hI-36hNI1.017831
Time course 60hI-60hNI0.974690.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.542450.289
transgenic ySAMdc/azygous control (breaker)1.032751
transgenic ySAMdc/azygous control (red)1.526010.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.878730.186

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.927050.431

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.598631
Manapal/WT (red)0.958760.728