Expression of 1-1-6.1.2.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.862710.419
27DAP/17DAP0.713940.266
39DAP/27DAP1.264510.779
41DAP/39DAP0.888030.6
42DAP/41DAP2.925550.685
43DAP/42DAP1.000630.937
47DAP/43DAP0.899410.595
52DAP/47DAP1.150150.776
57DAP/52DAP1.346940.904

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.988220.578
17DAP/reference1.088160.025
27DAP/reference1.071460.277
39DAP/reference0.980720.624
41DAP/reference0.939450.267
42DAP/reference0.953740.046
43DAP/reference1.060910.382
47DAP/reference0.936570.009
52DAP/reference0.979890.515
57DAP/reference1.093810.022

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.400260.036
27DAP/17DAP1.122520.677
39DAP/27DAP0.996871
41DAP/39DAP1.000840.98
42DAP/41DAP1.159790.753
43DAP/42DAP0.896970.224
47DAP/43DAP1.140160.756
52DAP/47DAP1.249180.372
57DAP/52DAP1.224530.479
57DAP/7DAP1.171711

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.069870.676
17DAP/reference1.208480.092
27DAP/reference1.284030.246
39DAP/reference1.247130.141
41DAP/reference1.295190.054
42DAP/reference1.262310.037
43DAP/reference1.304280.483
47DAP/reference0.958750.383
52DAP/reference1.187530.058
57DAP/reference1.314240.031

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.010210.832
17DAP/reference0.932490.124
27DAP/reference0.931890.249
39DAP/reference0.990170.586
41DAP/reference0.940090.13
42DAP/reference0.891040.108
43DAP/reference0.944420.307
47DAP/reference0.939330.133
52DAP/reference0.966360.302
57DAP/reference1.08070.306

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.137740.505
17DAP/reference1.286020.427
27DAP/reference1.000410.843
39DAP/reference0.902350.464
41DAP/reference1.232160.188
42DAP/reference0.873610.445
43DAP/reference1.043390.755
47DAP/reference0.972180.465
52DAP/reference1.080070.674
57DAP/reference1.248880.038

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.09460.735
26DAP/20DAP0.874851
34DAP/26DAP1.186531
51DAP/34DAP0.983130.799
52DAP/51DAP0.772961
53DAP/52DAP0.814470.085
55DAP/53DAP1.132490.898
57DAP/55DAP1.203810.461
62DAP/57DAP1.082080.868
68DAP/62DAP0.947660.81
68DAP/14DAP0.911071

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.529540.198

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.829240.286
Mature Green Tomato/Ripe Tomato1.89520.016
Immature Eggplant/Mature Eggplant0.859460.407
Ripe Pepper/Ripe Tomato1.422851
Mature Eggplant/Ripe Tomato2.938720.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.54784
1-1-2/M821.048411
12-2/M82N/AN/A
12-4/M820.62872
1-3/M821.584431
2-1-1/M820.91607
2-1/M820.61105
2-6/M820.59575
3-2/M820.93668
4-1-1/M82N/AN/A
4-1/M821.43763
4-3-2/M820.96542
4-3/M820.946751
5-3/M821.0781
6-2/M820.960941
6-3/M821.171761
7-1/M820.791010.476
7-2/M821.24171
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.763381
IL2-6/WTpooled1.099771
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.156521
IL12-4/WTpooled1.054110.891
IL1-4/WTpooled2.011171
WT/WTpooled1.023561

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.927940.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.018481
DC3000/delta hrp 6h0.954740.95
DC3000/delta hrp 12h0.994641
DC3000/delta hrp 24h0.974920.861

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.16417
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.215171
Exp 36h0.853630.623
Exp 60h0.807630.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.98951
Var 0h0.892870.933
Var 12h I row2-row11.133420.406
Var 12h NI row2-row11.10961
Var 36h I row2-row11.035341
Var 36h NI row2-row111.49730.482
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row10.870711
Time course 0hI-0hNI0.814190.091
Time course 12hI-12hNI1.032330.849
Time course 36hI-36hNI1.076760.58
Time course 60hI-60hNI0.874160.319

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.299190.289
transgenic ySAMdc/azygous control (breaker)0.981751
transgenic ySAMdc/azygous control (red)1.098490.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.014750.525

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.158980.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.620160.083
Manapal/WT (break)1.427240.183
Manapal/WT (red)1.14321