Expression of 1-1-6.1.2.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.86271 | 0.419 |
27DAP/17DAP | 0.71394 | 0.266 |
39DAP/27DAP | 1.26451 | 0.779 |
41DAP/39DAP | 0.88803 | 0.6 |
42DAP/41DAP | 2.92555 | 0.685 |
43DAP/42DAP | 1.00063 | 0.937 |
47DAP/43DAP | 0.89941 | 0.595 |
52DAP/47DAP | 1.15015 | 0.776 |
57DAP/52DAP | 1.34694 | 0.904 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98822 | 0.578 |
17DAP/reference | 1.08816 | 0.025 |
27DAP/reference | 1.07146 | 0.277 |
39DAP/reference | 0.98072 | 0.624 |
41DAP/reference | 0.93945 | 0.267 |
42DAP/reference | 0.95374 | 0.046 |
43DAP/reference | 1.06091 | 0.382 |
47DAP/reference | 0.93657 | 0.009 |
52DAP/reference | 0.97989 | 0.515 |
57DAP/reference | 1.09381 | 0.022 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.40026 | 0.036 |
27DAP/17DAP | 1.12252 | 0.677 |
39DAP/27DAP | 0.99687 | 1 |
41DAP/39DAP | 1.00084 | 0.98 |
42DAP/41DAP | 1.15979 | 0.753 |
43DAP/42DAP | 0.89697 | 0.224 |
47DAP/43DAP | 1.14016 | 0.756 |
52DAP/47DAP | 1.24918 | 0.372 |
57DAP/52DAP | 1.22453 | 0.479 |
57DAP/7DAP | 1.17171 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06987 | 0.676 |
17DAP/reference | 1.20848 | 0.092 |
27DAP/reference | 1.28403 | 0.246 |
39DAP/reference | 1.24713 | 0.141 |
41DAP/reference | 1.29519 | 0.054 |
42DAP/reference | 1.26231 | 0.037 |
43DAP/reference | 1.30428 | 0.483 |
47DAP/reference | 0.95875 | 0.383 |
52DAP/reference | 1.18753 | 0.058 |
57DAP/reference | 1.31424 | 0.031 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01021 | 0.832 |
17DAP/reference | 0.93249 | 0.124 |
27DAP/reference | 0.93189 | 0.249 |
39DAP/reference | 0.99017 | 0.586 |
41DAP/reference | 0.94009 | 0.13 |
42DAP/reference | 0.89104 | 0.108 |
43DAP/reference | 0.94442 | 0.307 |
47DAP/reference | 0.93933 | 0.133 |
52DAP/reference | 0.96636 | 0.302 |
57DAP/reference | 1.0807 | 0.306 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13774 | 0.505 |
17DAP/reference | 1.28602 | 0.427 |
27DAP/reference | 1.00041 | 0.843 |
39DAP/reference | 0.90235 | 0.464 |
41DAP/reference | 1.23216 | 0.188 |
42DAP/reference | 0.87361 | 0.445 |
43DAP/reference | 1.04339 | 0.755 |
47DAP/reference | 0.97218 | 0.465 |
52DAP/reference | 1.08007 | 0.674 |
57DAP/reference | 1.24888 | 0.038 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0946 | 0.735 |
26DAP/20DAP | 0.87485 | 1 |
34DAP/26DAP | 1.18653 | 1 |
51DAP/34DAP | 0.98313 | 0.799 |
52DAP/51DAP | 0.77296 | 1 |
53DAP/52DAP | 0.81447 | 0.085 |
55DAP/53DAP | 1.13249 | 0.898 |
57DAP/55DAP | 1.20381 | 0.461 |
62DAP/57DAP | 1.08208 | 0.868 |
68DAP/62DAP | 0.94766 | 0.81 |
68DAP/14DAP | 0.91107 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.52954 | 0.198 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.82924 | 0.286 |
Mature Green Tomato/Ripe Tomato | 1.8952 | 0.016 |
Immature Eggplant/Mature Eggplant | 0.85946 | 0.407 |
Ripe Pepper/Ripe Tomato | 1.42285 | 1 |
Mature Eggplant/Ripe Tomato | 2.93872 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.54784 | |
1-1-2/M82 | 1.04841 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.62872 | |
1-3/M82 | 1.58443 | 1 |
2-1-1/M82 | 0.91607 | |
2-1/M82 | 0.61105 | |
2-6/M82 | 0.59575 | |
3-2/M82 | 0.93668 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.43763 | |
4-3-2/M82 | 0.96542 | |
4-3/M82 | 0.94675 | 1 |
5-3/M82 | 1.078 | 1 |
6-2/M82 | 0.96094 | 1 |
6-3/M82 | 1.17176 | 1 |
7-1/M82 | 0.79101 | 0.476 |
7-2/M82 | 1.2417 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.76338 | 1 |
IL2-6/WTpooled | 1.09977 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.15652 | 1 |
IL12-4/WTpooled | 1.05411 | 0.891 |
IL1-4/WTpooled | 2.01117 | 1 |
WT/WTpooled | 1.02356 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.92794 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01848 | 1 |
DC3000/delta hrp 6h | 0.95474 | 0.95 |
DC3000/delta hrp 12h | 0.99464 | 1 |
DC3000/delta hrp 24h | 0.97492 | 0.861 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 2.16417 | |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.21517 | 1 |
Exp 36h | 0.85363 | 0.623 |
Exp 60h | 0.80763 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9895 | 1 |
Var 0h | 0.89287 | 0.933 |
Var 12h I row2-row1 | 1.13342 | 0.406 |
Var 12h NI row2-row1 | 1.1096 | 1 |
Var 36h I row2-row1 | 1.03534 | 1 |
Var 36h NI row2-row1 | 11.4973 | 0.482 |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 0.87071 | 1 |
Time course 0hI-0hNI | 0.81419 | 0.091 |
Time course 12hI-12hNI | 1.03233 | 0.849 |
Time course 36hI-36hNI | 1.07676 | 0.58 |
Time course 60hI-60hNI | 0.87416 | 0.319 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.29919 | 0.289 |
transgenic ySAMdc/azygous control (breaker) | 0.98175 | 1 |
transgenic ySAMdc/azygous control (red) | 1.09849 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01475 | 0.525 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.15898 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.62016 | 0.083 |
Manapal/WT (break) | 1.42724 | 0.183 |
Manapal/WT (red) | 1.1432 | 1 |
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