Expression of 1-1-6.1.20.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.926570.586
27DAP/17DAP1.456920.646
39DAP/27DAP0.771710.458
41DAP/39DAP1.412670.331
42DAP/41DAP0.995851
43DAP/42DAP0.973540.912
47DAP/43DAP1.09520.979
52DAP/47DAP1.078060.906
57DAP/52DAP1.00410.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.014561
17DAP/reference0.881790.038
27DAP/reference1.030220.847
39DAP/reference0.814940.149
41DAP/reference0.965960.667
42DAP/reference1.327170.001
43DAP/reference0.842340.019
47DAP/reference1.072550.223
52DAP/reference0.876080.099
57DAP/reference1.05640.582

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.951840.428
27DAP/17DAP0.959480.648
39DAP/27DAP0.987540.943
41DAP/39DAP1.127110.124
42DAP/41DAP1.003360.899
43DAP/42DAP1.011430.554
47DAP/43DAP0.998570.998
52DAP/47DAP0.949940.719
57DAP/52DAP0.970450.695
57DAP/7DAP0.922390.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.016021
17DAP/reference0.890160.028
27DAP/reference1.026951
39DAP/reference0.83950.064
41DAP/reference0.888080.086
42DAP/reference1.081730.686
43DAP/reference1.402840.008
47DAP/reference0.979380.671
52DAP/reference1.311470.015
57DAP/reference1.555920.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.961470.639
17DAP/reference0.972220.523
27DAP/reference1.173310.174
39DAP/reference1.217550.073
41DAP/reference1.1610.036
42DAP/reference1.40130.009
43DAP/reference1.384750.034
47DAP/reference1.500950.009
52DAP/reference1.014741
57DAP/reference1.071030.508

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.763910.039
17DAP/reference0.859250.275
27DAP/reference1.036560.834
39DAP/reference1.234430.014
41DAP/reference0.912560.167
42DAP/reference0.940730.361
43DAP/reference0.896530.049
47DAP/reference0.983550.538
52DAP/reference1.001980.928
57DAP/reference1.082630.592

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.138931
26DAP/20DAP0.932651
34DAP/26DAP1.058740.819
51DAP/34DAP1.023150.84
52DAP/51DAP1.015470.776
53DAP/52DAP1.050180.845
55DAP/53DAP1.08240.584
57DAP/55DAP1.17010.584
62DAP/57DAP1.223050.515
68DAP/62DAP1.004620.863
68DAP/14DAP1.464010.161

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.920650.115

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.39140.058
Mature Green Tomato/Ripe Tomato0.672230.06
Immature Eggplant/Mature Eggplant0.872280.329
Ripe Pepper/Ripe Tomato0.378910.224
Mature Eggplant/Ripe Tomato0.637691

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.959560.944
1-1-2/M820.940920.958
12-2/M820.933870.955
12-4/M820.921191
1-3/M821.01971
2-1-1/M820.99661
2-1/M821.133170.345
2-6/M820.952850.421
3-2/M821.007911
4-1-1/M821.022241
4-1/M820.960361
4-3-2/M820.833490.487
4-3/M820.98451
5-3/M820.990761
6-2/M820.98151
6-3/M821.357191
7-1/M820.971611
7-2/M821.016741
9-3-2/M820.755130.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.917351
IL2-6/WTpooled0.881851
IL7-5/WTpooled1.17171
IL7-3/WTpooled1.191361
IL12-4/WTpooled0.781930.554
IL1-4/WTpooled0.973611
WT/WTpooled1.026351

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.011311

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.985241
DC3000/delta hrp 6h1.264631
DC3000/delta hrp 12h1.076931
DC3000/delta hrp 24h1.024970.728

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.930570.629
DC3000 delta B/DC3000 delta AB1.06940.433

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.338311
Exp 36h1.140031
Exp 60h1.219711

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.984261
Var 0hN/AN/A
Var 12h I row2-row11.057390.473
Var 12h NI row2-row10.892190.438
Var 36h I row2-row11.065090.908
Var 36h NI row2-row11.136780.276
Var 60h I row2-row10.938590.952
Var 60h NI row2-row11.123370.904
Time course 0hI-0hNI1.083720.246
Time course 12hI-12hNI1.033940.687
Time course 36hI-36hNI1.08610.044
Time course 60hI-60hNI1.025620.495

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.058280.612
transgenic ySAMdc/azygous control (breaker)0.387920.124
transgenic ySAMdc/azygous control (red)1.136050.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.198620.04

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.319110.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.793080.172
Manapal/WT (break)0.664370.333
Manapal/WT (red)0.539360.183