Expression of 1-1-6.1.20.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.2034 | 0.498 |
27DAP/17DAP | 0.83233 | 0.575 |
39DAP/27DAP | 0.96409 | 0.7 |
41DAP/39DAP | 0.76242 | 0.227 |
42DAP/41DAP | 1.00684 | 1 |
43DAP/42DAP | 1.09605 | 0.933 |
47DAP/43DAP | 1.16013 | 0.618 |
52DAP/47DAP | 1.08025 | 0.898 |
57DAP/52DAP | 1.0154 | 0.992 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76816 | 0.024 |
17DAP/reference | 0.79796 | 0.009 |
27DAP/reference | 1.01353 | 1 |
39DAP/reference | 0.94065 | 0.37 |
41DAP/reference | 0.82092 | 0.026 |
42DAP/reference | 0.92315 | 0.139 |
43DAP/reference | 0.82939 | 0.084 |
47DAP/reference | 0.89426 | 0.191 |
52DAP/reference | 1.24651 | 0.032 |
57DAP/reference | 1.3541 | 0.011 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.69636 | 0.158 |
27DAP/17DAP | 0.94823 | 0.854 |
39DAP/27DAP | 0.90304 | 0.432 |
41DAP/39DAP | 1.08176 | 0.914 |
42DAP/41DAP | 0.95705 | 0.67 |
43DAP/42DAP | 1.14498 | 1 |
47DAP/43DAP | 1.07485 | 0.939 |
52DAP/47DAP | 1.13331 | 0.915 |
57DAP/52DAP | 1.00186 | 0.768 |
57DAP/7DAP | 1.05266 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06913 | 0.676 |
17DAP/reference | 1.00723 | 1 |
27DAP/reference | 1.07807 | 0.16 |
39DAP/reference | 0.87416 | 0.039 |
41DAP/reference | 0.95989 | 0.394 |
42DAP/reference | 1.02526 | 0.686 |
43DAP/reference | 0.83339 | 0.059 |
47DAP/reference | 0.99753 | 1 |
52DAP/reference | 0.89854 | 0.061 |
57DAP/reference | 0.95289 | 0.314 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.7723 | 0.011 |
17DAP/reference | 0.65739 | 0.004 |
27DAP/reference | 0.81198 | 0.051 |
39DAP/reference | 0.79792 | 0.011 |
41DAP/reference | 0.9034 | 0.13 |
42DAP/reference | 0.95105 | 0.433 |
43DAP/reference | 0.91799 | 0.314 |
47DAP/reference | 0.96197 | 0.379 |
52DAP/reference | 0.92626 | 0.023 |
57DAP/reference | 0.77338 | 0.028 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86542 | 0.055 |
17DAP/reference | 0.92272 | 0.286 |
27DAP/reference | 0.92658 | 0.155 |
39DAP/reference | 0.97316 | 0.544 |
41DAP/reference | 1.04935 | 0.471 |
42DAP/reference | 0.89871 | 0.087 |
43DAP/reference | 0.9702 | 0.503 |
47DAP/reference | 0.93563 | 0.357 |
52DAP/reference | 0.86216 | 0.25 |
57DAP/reference | 1.13087 | 0.47 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.18201 | 0.966 |
26DAP/20DAP | 0.70516 | 0.512 |
34DAP/26DAP | 1.14553 | 1 |
51DAP/34DAP | 1.24617 | 0.759 |
52DAP/51DAP | 1.04933 | 0.808 |
53DAP/52DAP | 1.30797 | 0.712 |
55DAP/53DAP | 1.66354 | 0.79 |
57DAP/55DAP | 1.24605 | 0.854 |
62DAP/57DAP | 1.16124 | 0.833 |
68DAP/62DAP | 1.56295 | 0.481 |
68DAP/14DAP | 2.08718 | 0.032 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.79253 | 0.378 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 0.93329 | 0.134 |
Ripe Pepper/Ripe Tomato | 1.79822 | |
Mature Eggplant/Ripe Tomato | 4.90616 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96144 | 0.961 |
1-1-2/M82 | 0.96541 | |
12-2/M82 | 0.92765 | |
12-4/M82 | 0.96846 | 1 |
1-3/M82 | 0.73907 | 0.501 |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.97459 | 1 |
3-2/M82 | 0.84911 | |
4-1-1/M82 | 0.64249 | |
4-1/M82 | 1.66458 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.87296 | 1 |
6-2/M82 | 1.0321 | 1 |
6-3/M82 | 1.00692 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.79917 | 0.881 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.94926 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06332 | 0.724 |
DC3000/delta hrp 6h | 0.33748 | |
DC3000/delta hrp 12h | 1.10764 | 1 |
DC3000/delta hrp 24h | 1.09549 | 0.411 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97594 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 2.3783 | 0.544 |
Var 12h NI row2-row1 | 1.08553 | 1 |
Var 36h I row2-row1 | 0.90867 | |
Var 36h NI row2-row1 | 0.61916 | 0.549 |
Var 60h I row2-row1 | 1.04909 | |
Var 60h NI row2-row1 | 0.82955 | 0.302 |
Time course 0hI-0hNI | 0.91462 | 0.852 |
Time course 12hI-12hNI | 0.81495 | 0.357 |
Time course 36hI-36hNI | 0.59763 | 0.027 |
Time course 60hI-60hNI | 0.63785 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.04478 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 0.81377 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.96552 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99448 | 0.784 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.83721 | 0.255 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.03529 | 1 |
Manapal/WT (break) | 0.93119 | 1 |
Manapal/WT (red) | 1.1081 | 0.413 |
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