Expression of 1-1-6.1.20.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.20340.498
27DAP/17DAP0.832330.575
39DAP/27DAP0.964090.7
41DAP/39DAP0.762420.227
42DAP/41DAP1.006841
43DAP/42DAP1.096050.933
47DAP/43DAP1.160130.618
52DAP/47DAP1.080250.898
57DAP/52DAP1.01540.992

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.768160.024
17DAP/reference0.797960.009
27DAP/reference1.013531
39DAP/reference0.940650.37
41DAP/reference0.820920.026
42DAP/reference0.923150.139
43DAP/reference0.829390.084
47DAP/reference0.894260.191
52DAP/reference1.246510.032
57DAP/reference1.35410.011

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.696360.158
27DAP/17DAP0.948230.854
39DAP/27DAP0.903040.432
41DAP/39DAP1.081760.914
42DAP/41DAP0.957050.67
43DAP/42DAP1.144981
47DAP/43DAP1.074850.939
52DAP/47DAP1.133310.915
57DAP/52DAP1.001860.768
57DAP/7DAP1.052660.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.069130.676
17DAP/reference1.007231
27DAP/reference1.078070.16
39DAP/reference0.874160.039
41DAP/reference0.959890.394
42DAP/reference1.025260.686
43DAP/reference0.833390.059
47DAP/reference0.997531
52DAP/reference0.898540.061
57DAP/reference0.952890.314

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.77230.011
17DAP/reference0.657390.004
27DAP/reference0.811980.051
39DAP/reference0.797920.011
41DAP/reference0.90340.13
42DAP/reference0.951050.433
43DAP/reference0.917990.314
47DAP/reference0.961970.379
52DAP/reference0.926260.023
57DAP/reference0.773380.028

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.865420.055
17DAP/reference0.922720.286
27DAP/reference0.926580.155
39DAP/reference0.973160.544
41DAP/reference1.049350.471
42DAP/reference0.898710.087
43DAP/reference0.97020.503
47DAP/reference0.935630.357
52DAP/reference0.862160.25
57DAP/reference1.130870.47

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.182010.966
26DAP/20DAP0.705160.512
34DAP/26DAP1.145531
51DAP/34DAP1.246170.759
52DAP/51DAP1.049330.808
53DAP/52DAP1.307970.712
55DAP/53DAP1.663540.79
57DAP/55DAP1.246050.854
62DAP/57DAP1.161240.833
68DAP/62DAP1.562950.481
68DAP/14DAP2.087180.032

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.792530.378

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant0.933290.134
Ripe Pepper/Ripe Tomato1.79822
Mature Eggplant/Ripe Tomato4.906160.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.961440.961
1-1-2/M820.96541
12-2/M820.92765
12-4/M820.968461
1-3/M820.739070.501
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.974591
3-2/M820.84911
4-1-1/M820.64249
4-1/M821.66458
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.872961
6-2/M821.03211
6-3/M821.00692
7-1/M82N/AN/A
7-2/M820.799170.881
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.94926

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.063320.724
DC3000/delta hrp 6h0.33748
DC3000/delta hrp 12h1.107641
DC3000/delta hrp 24h1.095490.411

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.975941
Var 0hN/AN/A
Var 12h I row2-row12.37830.544
Var 12h NI row2-row11.085531
Var 36h I row2-row10.90867
Var 36h NI row2-row10.619160.549
Var 60h I row2-row11.04909
Var 60h NI row2-row10.829550.302
Time course 0hI-0hNI0.914620.852
Time course 12hI-12hNI0.814950.357
Time course 36hI-36hNI0.597630.027
Time course 60hI-60hNI0.637850.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.044780.798
transgenic ySAMdc/azygous control (breaker)0.813770.173
transgenic ySAMdc/azygous control (red)0.965521

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.994480.784

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.837210.255

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.035291
Manapal/WT (break)0.931191
Manapal/WT (red)1.10810.413