Expression of 1-1-6.1.3.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04666 | 0.904 |
27DAP/17DAP | 0.95467 | 0.902 |
39DAP/27DAP | 0.94561 | 0.663 |
41DAP/39DAP | 1.07624 | 0.758 |
42DAP/41DAP | 1.0041 | 1 |
43DAP/42DAP | 0.97863 | 0.91 |
47DAP/43DAP | 1.49772 | 0.715 |
52DAP/47DAP | 1.17763 | 0.813 |
57DAP/52DAP | 1.07892 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76573 | 0.027 |
17DAP/reference | 0.79773 | 0.138 |
27DAP/reference | 0.93431 | 0.304 |
39DAP/reference | 1.04772 | 0.445 |
41DAP/reference | 0.88918 | 0.114 |
42DAP/reference | 0.69991 | 0.004 |
43DAP/reference | 0.97441 | |
47DAP/reference | 0.74168 | 0.009 |
52DAP/reference | 1.09796 | 0.205 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.83839 | 0.194 |
27DAP/17DAP | 0.8654 | 0.169 |
39DAP/27DAP | 0.92938 | 0.54 |
41DAP/39DAP | 1.53769 | 0.371 |
42DAP/41DAP | 0.97256 | 0.662 |
43DAP/42DAP | 1.19234 | 0.23 |
47DAP/43DAP | 1.07831 | 0.906 |
52DAP/47DAP | 1.28965 | 0.374 |
57DAP/52DAP | 1.23338 | 0.357 |
57DAP/7DAP | 1.19354 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10661 | 0.311 |
17DAP/reference | 1.56826 | 0.006 |
27DAP/reference | 1.40076 | 0.007 |
39DAP/reference | 1.51263 | 0.006 |
41DAP/reference | 1.54858 | 0.029 |
42DAP/reference | 1.67228 | 0.007 |
43DAP/reference | 1.62656 | 0.007 |
47DAP/reference | 1.30427 | 0.224 |
52DAP/reference | 1.47355 | 0.007 |
57DAP/reference | 1.50081 | 0.011 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82736 | 0.079 |
17DAP/reference | 0.67646 | 0.005 |
27DAP/reference | 0.79497 | 0.024 |
39DAP/reference | 0.77803 | 0.01 |
41DAP/reference | 0.9771 | 0.441 |
42DAP/reference | 0.83578 | 0.037 |
43DAP/reference | 0.75049 | 0.029 |
47DAP/reference | 0.82872 | 0.041 |
52DAP/reference | 0.88224 | 0.066 |
57DAP/reference | 0.72517 | 0.011 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12446 | 0.329 |
17DAP/reference | 1.02004 | 0.81 |
27DAP/reference | 1.79872 | 0.023 |
39DAP/reference | 1.57115 | 0.011 |
41DAP/reference | 1.51192 | 0.011 |
42DAP/reference | 1.34346 | 0.049 |
43DAP/reference | 1.29458 | 0.105 |
47DAP/reference | 0.92675 | 0.231 |
52DAP/reference | 1.1113 | 0.657 |
57DAP/reference | 1.29967 | 0.021 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01685 | 1 |
26DAP/20DAP | 0.9368 | 1 |
34DAP/26DAP | 0.9419 | 0.954 |
51DAP/34DAP | 1.15503 | 0.844 |
52DAP/51DAP | 1.11688 | 0.873 |
53DAP/52DAP | 1.02981 | 0.929 |
55DAP/53DAP | 0.95571 | 0.775 |
57DAP/55DAP | 1.09807 | 0.823 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 2.82499 | 0.004 |
68DAP/14DAP | 3.03256 | 0.071 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.94972 | 0.493 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 0.79887 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.89647 | |
1-1-2/M82 | 1.40716 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.04645 | |
1-3/M82 | 0.87985 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.70868 | |
4-1/M82 | 1.60075 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.03914 | 1 |
6-2/M82 | 1.01069 | |
6-3/M82 | 1.57638 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.87832 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.85525 | 0.247 |
IL2-6/WTpooled | 1.0238 | 1 |
IL7-5/WTpooled | 1.01182 | 1 |
IL7-3/WTpooled | 0.9855 | 1 |
IL12-4/WTpooled | 0.87168 | 0.71 |
IL1-4/WTpooled | 1.00924 | 1 |
WT/WTpooled | 1.02303 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 3.01034 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03021 | 0.921 |
DC3000/delta hrp 6h | 1.11067 | 1 |
DC3000/delta hrp 12h | 0.93204 | 1 |
DC3000/delta hrp 24h | 0.97844 | 0.887 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.86018 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.20067 | 0.225 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.06372 | 1 |
Exp 36h | 1.3941 | 0.693 |
Exp 60h | 1.14312 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.85476 | 1 |
Var 12h I row2-row1 | 0.9681 | 0.948 |
Var 12h NI row2-row1 | 0.68063 | 0.488 |
Var 36h I row2-row1 | 0.97617 | 1 |
Var 36h NI row2-row1 | 1.26694 | 1 |
Var 60h I row2-row1 | 1.39313 | |
Var 60h NI row2-row1 | 0.84145 | 0.977 |
Time course 0hI-0hNI | 1.04326 | 0.852 |
Time course 12hI-12hNI | 1.0159 | 1 |
Time course 36hI-36hNI | 1.69946 | 0.004 |
Time course 60hI-60hNI | 0.76769 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.93366 | 0.662 |
transgenic ySAMdc/azygous control (breaker) | 1.15099 | 1 |
transgenic ySAMdc/azygous control (red) | 1.19747 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98507 | 0.393 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.53679 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.59263 | 0.087 |
Manapal/WT (break) | 2.03956 | 0.381 |
Manapal/WT (red) | 1.44549 | 1 |
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