Expression of 1-1-6.1.3.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.216850.755
27DAP/17DAP1.014771
39DAP/27DAP0.93520.641
41DAP/39DAP1.886790.149
42DAP/41DAP1.176780.825
43DAP/42DAP1.160771
47DAP/43DAP1.095240.943
52DAP/47DAP1.05430.861
57DAP/52DAP0.983320.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.979130.465
17DAP/reference0.817660.019
27DAP/reference0.942070.417
39DAP/reference0.885280.178
41DAP/reference0.778480.009
42DAP/reference0.840260.007
43DAP/reference0.881760.061
47DAP/reference0.923020.207
52DAP/reference1.199530.092
57DAP/reference1.351830.012

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.473190.5
27DAP/17DAP0.919790.724
39DAP/27DAP1.016010.845
41DAP/39DAP1.514830.19
42DAP/41DAP1.052650.887
43DAP/42DAP1.229450.324
47DAP/43DAP1.056680.857
52DAP/47DAP1.090130.856
57DAP/52DAP0.979860.793
57DAP/7DAP0.55478

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.144570.351
17DAP/reference1.332940.013
27DAP/reference1.287340.049
39DAP/reference1.228110.062
41DAP/reference1.277340.043
42DAP/reference1.27210.024
43DAP/reference1.43960.016
47DAP/reference1.101290.413
52DAP/reference1.268380.086
57DAP/reference1.310220.017

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.894740.238
17DAP/reference0.812980.037
27DAP/reference0.804490.014
39DAP/reference0.850550.056
41DAP/reference0.908530.108
42DAP/reference0.791630.037
43DAP/reference0.800690.08
47DAP/reference0.863930.048
52DAP/reference0.950790.203
57DAP/reference0.73240.01

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.192710.172
17DAP/reference1.056581
27DAP/reference1.588270.028
39DAP/reference1.278130.091
41DAP/reference1.220450.1
42DAP/reference1.287320.131
43DAP/reference1.22220.194
47DAP/reference0.89970.199
52DAP/reference1.100890.826
57DAP/reference1.141550.401

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.074581
26DAP/20DAP0.67498
34DAP/26DAP1.060661
51DAP/34DAP1.229310.746
52DAP/51DAP1.731880.808
53DAP/52DAP1.113290.797
55DAP/53DAP0.779610.243
57DAP/55DAP1.19256
62DAP/57DAP1.46397
68DAP/62DAP1.879550.043
68DAP/14DAP1.76378

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.123990.954

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.848130.384
Mature Green Tomato/Ripe Tomato0.527680.022
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.79785
Mature Eggplant/Ripe Tomato0.438710.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.44216
1-1-2/M821.194440.977
12-2/M821.44611
12-4/M821.225851
1-3/M821.468210.248
2-1-1/M821.15852
2-1/M820.48501
2-6/M821.182320.364
3-2/M821.3638
4-1-1/M821.09034
4-1/M820.65293
4-3-2/M82N/AN/A
4-3/M821.105011
5-3/M820.900991
6-2/M821.60434
6-3/M821.10774
7-1/M820.908190.509
7-2/M820.7920.599
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.835040.247
IL2-6/WTpooled1.016991
IL7-5/WTpooled0.830911
IL7-3/WTpooled0.968411
IL12-4/WTpooled1.009971
IL1-4/WTpooled0.98821
WT/WTpooled1.09281

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.835820.178

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.069470.921
DC3000/delta hrp 6h1.339951
DC3000/delta hrp 12h0.989641
DC3000/delta hrp 24h0.797280.083

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.521771
Exp 36h0.537860.419
Exp 60h0.630290.259

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.96551
Var 0h1.05871
Var 12h I row2-row11.04203
Var 12h NI row2-row11.138620.235
Var 36h I row2-row10.941511
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row11.066620.904
Time course 0hI-0hNI0.990811
Time course 12hI-12hNI0.8820.283
Time course 36hI-36hNI0.864480.236
Time course 60hI-60hNI0.167860.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.092530.339
transgenic ySAMdc/azygous control (breaker)1.536090.162
transgenic ySAMdc/azygous control (red)1.030610.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.998390.911

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.557870.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.765690.14
Manapal/WT (break)1.280760.381
Manapal/WT (red)0.817520.184