Expression of 1-1-6.1.3.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.21685 | 0.755 |
27DAP/17DAP | 1.01477 | 1 |
39DAP/27DAP | 0.9352 | 0.641 |
41DAP/39DAP | 1.88679 | 0.149 |
42DAP/41DAP | 1.17678 | 0.825 |
43DAP/42DAP | 1.16077 | 1 |
47DAP/43DAP | 1.09524 | 0.943 |
52DAP/47DAP | 1.0543 | 0.861 |
57DAP/52DAP | 0.98332 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97913 | 0.465 |
17DAP/reference | 0.81766 | 0.019 |
27DAP/reference | 0.94207 | 0.417 |
39DAP/reference | 0.88528 | 0.178 |
41DAP/reference | 0.77848 | 0.009 |
42DAP/reference | 0.84026 | 0.007 |
43DAP/reference | 0.88176 | 0.061 |
47DAP/reference | 0.92302 | 0.207 |
52DAP/reference | 1.19953 | 0.092 |
57DAP/reference | 1.35183 | 0.012 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.47319 | 0.5 |
27DAP/17DAP | 0.91979 | 0.724 |
39DAP/27DAP | 1.01601 | 0.845 |
41DAP/39DAP | 1.51483 | 0.19 |
42DAP/41DAP | 1.05265 | 0.887 |
43DAP/42DAP | 1.22945 | 0.324 |
47DAP/43DAP | 1.05668 | 0.857 |
52DAP/47DAP | 1.09013 | 0.856 |
57DAP/52DAP | 0.97986 | 0.793 |
57DAP/7DAP | 0.55478 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14457 | 0.351 |
17DAP/reference | 1.33294 | 0.013 |
27DAP/reference | 1.28734 | 0.049 |
39DAP/reference | 1.22811 | 0.062 |
41DAP/reference | 1.27734 | 0.043 |
42DAP/reference | 1.2721 | 0.024 |
43DAP/reference | 1.4396 | 0.016 |
47DAP/reference | 1.10129 | 0.413 |
52DAP/reference | 1.26838 | 0.086 |
57DAP/reference | 1.31022 | 0.017 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89474 | 0.238 |
17DAP/reference | 0.81298 | 0.037 |
27DAP/reference | 0.80449 | 0.014 |
39DAP/reference | 0.85055 | 0.056 |
41DAP/reference | 0.90853 | 0.108 |
42DAP/reference | 0.79163 | 0.037 |
43DAP/reference | 0.80069 | 0.08 |
47DAP/reference | 0.86393 | 0.048 |
52DAP/reference | 0.95079 | 0.203 |
57DAP/reference | 0.7324 | 0.01 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19271 | 0.172 |
17DAP/reference | 1.05658 | 1 |
27DAP/reference | 1.58827 | 0.028 |
39DAP/reference | 1.27813 | 0.091 |
41DAP/reference | 1.22045 | 0.1 |
42DAP/reference | 1.28732 | 0.131 |
43DAP/reference | 1.2222 | 0.194 |
47DAP/reference | 0.8997 | 0.199 |
52DAP/reference | 1.10089 | 0.826 |
57DAP/reference | 1.14155 | 0.401 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.07458 | 1 |
26DAP/20DAP | 0.67498 | |
34DAP/26DAP | 1.06066 | 1 |
51DAP/34DAP | 1.22931 | 0.746 |
52DAP/51DAP | 1.73188 | 0.808 |
53DAP/52DAP | 1.11329 | 0.797 |
55DAP/53DAP | 0.77961 | 0.243 |
57DAP/55DAP | 1.19256 | |
62DAP/57DAP | 1.46397 | |
68DAP/62DAP | 1.87955 | 0.043 |
68DAP/14DAP | 1.76378 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.12399 | 0.954 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.84813 | 0.384 |
Mature Green Tomato/Ripe Tomato | 0.52768 | 0.022 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.79785 | |
Mature Eggplant/Ripe Tomato | 0.43871 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.44216 | |
1-1-2/M82 | 1.19444 | 0.977 |
12-2/M82 | 1.44611 | |
12-4/M82 | 1.22585 | 1 |
1-3/M82 | 1.46821 | 0.248 |
2-1-1/M82 | 1.15852 | |
2-1/M82 | 0.48501 | |
2-6/M82 | 1.18232 | 0.364 |
3-2/M82 | 1.3638 | |
4-1-1/M82 | 1.09034 | |
4-1/M82 | 0.65293 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.10501 | 1 |
5-3/M82 | 0.90099 | 1 |
6-2/M82 | 1.60434 | |
6-3/M82 | 1.10774 | |
7-1/M82 | 0.90819 | 0.509 |
7-2/M82 | 0.792 | 0.599 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.83504 | 0.247 |
IL2-6/WTpooled | 1.01699 | 1 |
IL7-5/WTpooled | 0.83091 | 1 |
IL7-3/WTpooled | 0.96841 | 1 |
IL12-4/WTpooled | 1.00997 | 1 |
IL1-4/WTpooled | 0.9882 | 1 |
WT/WTpooled | 1.0928 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.83582 | 0.178 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06947 | 0.921 |
DC3000/delta hrp 6h | 1.33995 | 1 |
DC3000/delta hrp 12h | 0.98964 | 1 |
DC3000/delta hrp 24h | 0.79728 | 0.083 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.52177 | 1 |
Exp 36h | 0.53786 | 0.419 |
Exp 60h | 0.63029 | 0.259 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9655 | 1 |
Var 0h | 1.0587 | 1 |
Var 12h I row2-row1 | 1.04203 | |
Var 12h NI row2-row1 | 1.13862 | 0.235 |
Var 36h I row2-row1 | 0.94151 | 1 |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 1.06662 | 0.904 |
Time course 0hI-0hNI | 0.99081 | 1 |
Time course 12hI-12hNI | 0.882 | 0.283 |
Time course 36hI-36hNI | 0.86448 | 0.236 |
Time course 60hI-60hNI | 0.16786 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.09253 | 0.339 |
transgenic ySAMdc/azygous control (breaker) | 1.53609 | 0.162 |
transgenic ySAMdc/azygous control (red) | 1.03061 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99839 | 0.911 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.55787 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.76569 | 0.14 |
Manapal/WT (break) | 1.28076 | 0.381 |
Manapal/WT (red) | 0.81752 | 0.184 |
|
|