Expression of 1-1-6.1.3.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.33118 | 0.602 |
27DAP/17DAP | 0.94558 | 0.939 |
39DAP/27DAP | 1.10238 | 0.823 |
41DAP/39DAP | 0.97637 | 0.854 |
42DAP/41DAP | 7.28194 | 0.016 |
43DAP/42DAP | 3.4822 | 0.016 |
47DAP/43DAP | 0.54086 | 0.064 |
52DAP/47DAP | 1.4807 | 0.953 |
57DAP/52DAP | 0.56533 | 0.729 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.74219 | 0.078 |
17DAP/reference | 0.75516 | 0.029 |
27DAP/reference | 0.85827 | 0.092 |
39DAP/reference | 0.83559 | 0.276 |
41DAP/reference | 0.71442 | 0.012 |
42DAP/reference | 2.71192 | 0.003 |
43DAP/reference | 3.48513 | |
47DAP/reference | 2.42527 | 0.001 |
52DAP/reference | 1.36225 | 0.088 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.52952 | 0.482 |
27DAP/17DAP | 0.67204 | 0.195 |
39DAP/27DAP | 2.64217 | 0.067 |
41DAP/39DAP | 0.37514 | 0.013 |
42DAP/41DAP | 4.05224 | 0.07 |
43DAP/42DAP | 34.7822 | 0.013 |
47DAP/43DAP | 0.64966 | 0.008 |
52DAP/47DAP | 0.42022 | 0.045 |
57DAP/52DAP | 0.69002 | 0.219 |
57DAP/7DAP | 1.04781 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.55123 | 0.066 |
17DAP/reference | 0.40251 | 0.011 |
27DAP/reference | 0.5657 | 0.01 |
39DAP/reference | 0.41715 | 0.011 |
41DAP/reference | 0.40895 | 0.013 |
42DAP/reference | 0.62873 | 0.024 |
43DAP/reference | 1.10385 | 0.694 |
47DAP/reference | 0.9108 | 0.293 |
52DAP/reference | 0.2843 | 0.009 |
57DAP/reference | 0.25082 | 0.005 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.63672 | 0.015 |
17DAP/reference | 0.73848 | 0.006 |
27DAP/reference | 0.89745 | 0.249 |
39DAP/reference | 0.94307 | 0.442 |
41DAP/reference | 1.27852 | 0.599 |
42DAP/reference | 0.97767 | 0.482 |
43DAP/reference | 0.82667 | 0.111 |
47DAP/reference | 0.81702 | 0.012 |
52DAP/reference | 0.86883 | 0.01 |
57DAP/reference | 0.71524 | 0.023 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.41333 | 0.035 |
17DAP/reference | 0.72857 | 0.189 |
27DAP/reference | 0.44286 | 0.031 |
39DAP/reference | 0.53901 | 0.015 |
41DAP/reference | 0.56501 | 0.022 |
42DAP/reference | 1.53487 | 0.041 |
43DAP/reference | 2.60221 | 0.006 |
47DAP/reference | 1.78737 | 0.007 |
52DAP/reference | 2.04664 | 0.033 |
57DAP/reference | 1.29011 | 0.147 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.19972 | 0.966 |
26DAP/20DAP | 1.06772 | 0.744 |
34DAP/26DAP | 1.17173 | 0.819 |
51DAP/34DAP | 0.94226 | 0.785 |
52DAP/51DAP | 1.46739 | 0.094 |
53DAP/52DAP | 1.06109 | 1 |
55DAP/53DAP | 0.89929 | 0.604 |
57DAP/55DAP | 0.80991 | 0.286 |
62DAP/57DAP | 1.31357 | 0.004 |
68DAP/62DAP | 1.3431 | 0.472 |
68DAP/14DAP | 1.34963 | 0.074 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 9.39207 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.02166 | 0.017 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.06506 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.04656 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.45454 | 0.591 |
1-1-2/M82 | 1.11802 | 1 |
12-2/M82 | 0.97677 | 0.955 |
12-4/M82 | 3.27454 | 1 |
1-3/M82 | 0.97181 | 1 |
2-1-1/M82 | 0.89982 | 0.784 |
2-1/M82 | 0.82497 | 0.74 |
2-6/M82 | 1.12099 | 0.594 |
3-2/M82 | 0.37564 | 1 |
4-1-1/M82 | 1.05805 | 1 |
4-1/M82 | 1.00343 | |
4-3-2/M82 | 0.91156 | |
4-3/M82 | 1.12887 | 1 |
5-3/M82 | 0.98669 | 1 |
6-2/M82 | 1.06519 | 1 |
6-3/M82 | 0.94435 | 1 |
7-1/M82 | 0.79606 | 0.803 |
7-2/M82 | 1.0147 | 1 |
9-3-2/M82 | 3.05878 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.78642 | 1 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.08389 | 1 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03123 | 0.921 |
DC3000/delta hrp 6h | 0.8462 | |
DC3000/delta hrp 12h | 0.91011 | 1 |
DC3000/delta hrp 24h | 1.00106 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.81058 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98303 | 1 |
Var 0h | 0.49797 | 1 |
Var 12h I row2-row1 | 0.93366 | 0.856 |
Var 12h NI row2-row1 | 1.00252 | 1 |
Var 36h I row2-row1 | 1.02486 | 1 |
Var 36h NI row2-row1 | 1.07484 | 0.482 |
Var 60h I row2-row1 | 0.69825 | 0.582 |
Var 60h NI row2-row1 | 0.95286 | 0.866 |
Time course 0hI-0hNI | 1.01 | 0.867 |
Time course 12hI-12hNI | 1.00456 | 1 |
Time course 36hI-36hNI | 0.94186 | 0.312 |
Time course 60hI-60hNI | 0.74328 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.1689 | 0.612 |
transgenic ySAMdc/azygous control (breaker) | 7.67164 | 0.166 |
transgenic ySAMdc/azygous control (red) | 1.45822 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95582 | 0.133 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.73511 | 0.172 |
Manapal/WT (break) | 1.53092 | 1 |
Manapal/WT (red) | 1.43252 | 0.413 |
|
|