Expression of 1-1-6.1.3.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.331180.602
27DAP/17DAP0.945580.939
39DAP/27DAP1.102380.823
41DAP/39DAP0.976370.854
42DAP/41DAP7.281940.016
43DAP/42DAP3.48220.016
47DAP/43DAP0.540860.064
52DAP/47DAP1.48070.953
57DAP/52DAP0.565330.729

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.742190.078
17DAP/reference0.755160.029
27DAP/reference0.858270.092
39DAP/reference0.835590.276
41DAP/reference0.714420.012
42DAP/reference2.711920.003
43DAP/reference3.48513
47DAP/reference2.425270.001
52DAP/reference1.362250.088
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.529520.482
27DAP/17DAP0.672040.195
39DAP/27DAP2.642170.067
41DAP/39DAP0.375140.013
42DAP/41DAP4.052240.07
43DAP/42DAP34.78220.013
47DAP/43DAP0.649660.008
52DAP/47DAP0.420220.045
57DAP/52DAP0.690020.219
57DAP/7DAP1.047811

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.551230.066
17DAP/reference0.402510.011
27DAP/reference0.56570.01
39DAP/reference0.417150.011
41DAP/reference0.408950.013
42DAP/reference0.628730.024
43DAP/reference1.103850.694
47DAP/reference0.91080.293
52DAP/reference0.28430.009
57DAP/reference0.250820.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.636720.015
17DAP/reference0.738480.006
27DAP/reference0.897450.249
39DAP/reference0.943070.442
41DAP/reference1.278520.599
42DAP/reference0.977670.482
43DAP/reference0.826670.111
47DAP/reference0.817020.012
52DAP/reference0.868830.01
57DAP/reference0.715240.023

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.413330.035
17DAP/reference0.728570.189
27DAP/reference0.442860.031
39DAP/reference0.539010.015
41DAP/reference0.565010.022
42DAP/reference1.534870.041
43DAP/reference2.602210.006
47DAP/reference1.787370.007
52DAP/reference2.046640.033
57DAP/reference1.290110.147

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.199720.966
26DAP/20DAP1.067720.744
34DAP/26DAP1.171730.819
51DAP/34DAP0.942260.785
52DAP/51DAP1.467390.094
53DAP/52DAP1.061091
55DAP/53DAP0.899290.604
57DAP/55DAP0.809910.286
62DAP/57DAP1.313570.004
68DAP/62DAP1.34310.472
68DAP/14DAP1.349630.074

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker9.392070.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.021660.017
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.065060.224
Mature Eggplant/Ripe Tomato0.046560.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.454540.591
1-1-2/M821.118021
12-2/M820.976770.955
12-4/M823.274541
1-3/M820.971811
2-1-1/M820.899820.784
2-1/M820.824970.74
2-6/M821.120990.594
3-2/M820.375641
4-1-1/M821.058051
4-1/M821.00343
4-3-2/M820.91156
4-3/M821.128871
5-3/M820.986691
6-2/M821.065191
6-3/M820.944351
7-1/M820.796060.803
7-2/M821.01471
9-3-2/M823.058781

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.786421
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.083891
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.031230.921
DC3000/delta hrp 6h0.8462
DC3000/delta hrp 12h0.910111
DC3000/delta hrp 24h1.001061

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.810581
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.983031
Var 0h0.497971
Var 12h I row2-row10.933660.856
Var 12h NI row2-row11.002521
Var 36h I row2-row11.024861
Var 36h NI row2-row11.074840.482
Var 60h I row2-row10.698250.582
Var 60h NI row2-row10.952860.866
Time course 0hI-0hNI1.010.867
Time course 12hI-12hNI1.004561
Time course 36hI-36hNI0.941860.312
Time course 60hI-60hNI0.743280.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.16890.612
transgenic ySAMdc/azygous control (breaker)7.671640.166
transgenic ySAMdc/azygous control (red)1.458220.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.955820.133

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.735110.172
Manapal/WT (break)1.530921
Manapal/WT (red)1.432520.413