Expression of 1-1-6.1.3.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.768130.253
27DAP/17DAP0.871290.713
39DAP/27DAP1.020950.899
41DAP/39DAP1.047120.772
42DAP/41DAP1.794950.786
43DAP/42DAP0.984440.925
47DAP/43DAP1.115850.668
52DAP/47DAP1.058920.906
57DAP/52DAP1.099440.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.456380.026
17DAP/reference1.16920.03
27DAP/reference1.270070.041
39DAP/reference0.589880.016
41DAP/reference0.853750.154
42DAP/reference0.783260.046
43DAP/reference0.59160.129
47DAP/reference0.652190.01
52DAP/reference0.636030.014
57DAP/reference1.44811

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.707350.036
27DAP/17DAP0.780040.144
39DAP/27DAP0.808290.119
41DAP/39DAP1.199120.115
42DAP/41DAP0.917790.382
43DAP/42DAP0.777230.025
47DAP/43DAP0.929340.382
52DAP/47DAP1.075120.785
57DAP/52DAP1.01481
57DAP/7DAP1.138731

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.107640.274
17DAP/reference1.196570.059
27DAP/reference1.047340.453
39DAP/reference1.290910.017
41DAP/reference0.785650.04
42DAP/reference1.012880.675
43DAP/reference1.03820.923
47DAP/reference0.762880.128
52DAP/reference1.116220.599
57DAP/reference1.052870.536

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.480510.043
17DAP/reference1.506280.007
27DAP/reference1.284420.128
39DAP/reference0.737730.053
41DAP/reference0.869360.094
42DAP/reference1.039711
43DAP/reference0.942080.43
47DAP/reference0.642150.009
52DAP/reference0.773640.007
57DAP/reference0.980860.61

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.211060.02
17DAP/reference1.187610.145
27DAP/reference1.161650.373
39DAP/reference1.045860.792
41DAP/reference0.99970.826
42DAP/reference0.872950.087
43DAP/reference0.753740.038
47DAP/reference0.636720.007
52DAP/reference1.74690.448
57DAP/reference0.715160.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.283610.966
26DAP/20DAP1.662470.098
34DAP/26DAP0.975320.988
51DAP/34DAP1.957050.032
52DAP/51DAP0.76941
53DAP/52DAP1.109090.517
55DAP/53DAP0.823730.102
57DAP/55DAP1.178640.87
62DAP/57DAP1.427470.569
68DAP/62DAP0.981110.863
68DAP/14DAP1.194380.504

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.472090.022

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.249220.058
Mature Green Tomato/Ripe Tomato1.896430.017
Immature Eggplant/Mature Eggplant0.428350.057
Ripe Pepper/Ripe Tomato49.64380.256
Mature Eggplant/Ripe Tomato26.97020.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.84379
1-1-2/M820.93637
12-2/M82N/AN/A
12-4/M820.84693
1-3/M820.77551
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.863320.501
3-2/M820.75175
4-1-1/M82N/AN/A
4-1/M820.820661
4-3-2/M821.018451
4-3/M82N/AN/A
5-3/M820.881370.447
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.927551
7-2/M820.876540.599
9-3-2/M820.854930.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.957011
IL2-6/WTpooled1.272740.46
IL7-5/WTpooled1.38838
IL7-3/WTpooled1.084131
IL12-4/WTpooled0.95651
IL1-4/WTpooled1.059071
WT/WTpooled0.947291

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.019141

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.890150.941
DC3000/delta hrp 6h0.921450.95
DC3000/delta hrp 12h0.766661
DC3000/delta hrp 24h0.614950.038

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.681410.023
DC3000 delta B/DC3000 delta AB0.769340.027

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.951461
Exp 36h0.63940.434
Exp 60h0.565330.249

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.962761
Var 0h0.49131
Var 12h I row2-row10.721960.338
Var 12h NI row2-row11.024081
Var 36h I row2-row10.948031
Var 36h NI row2-row11.26351
Var 60h I row2-row10.89670.285
Var 60h NI row2-row11.073831
Time course 0hI-0hNI0.853420.166
Time course 12hI-12hNI1.024470.818
Time course 36hI-36hNI0.933820.179
Time course 60hI-60hNI0.328350.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.847210.454
transgenic ySAMdc/azygous control (breaker)1.362991
transgenic ySAMdc/azygous control (red)0.937711

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.74480.115

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt6.319930.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.577670.087
Manapal/WT (break)1.657630.381
Manapal/WT (red)4.158480.15