Expression of 1-1-6.1.3.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.76813 | 0.253 |
27DAP/17DAP | 0.87129 | 0.713 |
39DAP/27DAP | 1.02095 | 0.899 |
41DAP/39DAP | 1.04712 | 0.772 |
42DAP/41DAP | 1.79495 | 0.786 |
43DAP/42DAP | 0.98444 | 0.925 |
47DAP/43DAP | 1.11585 | 0.668 |
52DAP/47DAP | 1.05892 | 0.906 |
57DAP/52DAP | 1.09944 | 0.946 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.45638 | 0.026 |
17DAP/reference | 1.1692 | 0.03 |
27DAP/reference | 1.27007 | 0.041 |
39DAP/reference | 0.58988 | 0.016 |
41DAP/reference | 0.85375 | 0.154 |
42DAP/reference | 0.78326 | 0.046 |
43DAP/reference | 0.5916 | 0.129 |
47DAP/reference | 0.65219 | 0.01 |
52DAP/reference | 0.63603 | 0.014 |
57DAP/reference | 1.44811 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.70735 | 0.036 |
27DAP/17DAP | 0.78004 | 0.144 |
39DAP/27DAP | 0.80829 | 0.119 |
41DAP/39DAP | 1.19912 | 0.115 |
42DAP/41DAP | 0.91779 | 0.382 |
43DAP/42DAP | 0.77723 | 0.025 |
47DAP/43DAP | 0.92934 | 0.382 |
52DAP/47DAP | 1.07512 | 0.785 |
57DAP/52DAP | 1.0148 | 1 |
57DAP/7DAP | 1.13873 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10764 | 0.274 |
17DAP/reference | 1.19657 | 0.059 |
27DAP/reference | 1.04734 | 0.453 |
39DAP/reference | 1.29091 | 0.017 |
41DAP/reference | 0.78565 | 0.04 |
42DAP/reference | 1.01288 | 0.675 |
43DAP/reference | 1.0382 | 0.923 |
47DAP/reference | 0.76288 | 0.128 |
52DAP/reference | 1.11622 | 0.599 |
57DAP/reference | 1.05287 | 0.536 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.48051 | 0.043 |
17DAP/reference | 1.50628 | 0.007 |
27DAP/reference | 1.28442 | 0.128 |
39DAP/reference | 0.73773 | 0.053 |
41DAP/reference | 0.86936 | 0.094 |
42DAP/reference | 1.03971 | 1 |
43DAP/reference | 0.94208 | 0.43 |
47DAP/reference | 0.64215 | 0.009 |
52DAP/reference | 0.77364 | 0.007 |
57DAP/reference | 0.98086 | 0.61 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21106 | 0.02 |
17DAP/reference | 1.18761 | 0.145 |
27DAP/reference | 1.16165 | 0.373 |
39DAP/reference | 1.04586 | 0.792 |
41DAP/reference | 0.9997 | 0.826 |
42DAP/reference | 0.87295 | 0.087 |
43DAP/reference | 0.75374 | 0.038 |
47DAP/reference | 0.63672 | 0.007 |
52DAP/reference | 1.7469 | 0.448 |
57DAP/reference | 0.71516 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.28361 | 0.966 |
26DAP/20DAP | 1.66247 | 0.098 |
34DAP/26DAP | 0.97532 | 0.988 |
51DAP/34DAP | 1.95705 | 0.032 |
52DAP/51DAP | 0.7694 | 1 |
53DAP/52DAP | 1.10909 | 0.517 |
55DAP/53DAP | 0.82373 | 0.102 |
57DAP/55DAP | 1.17864 | 0.87 |
62DAP/57DAP | 1.42747 | 0.569 |
68DAP/62DAP | 0.98111 | 0.863 |
68DAP/14DAP | 1.19438 | 0.504 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.47209 | 0.022 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.24922 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.89643 | 0.017 |
Immature Eggplant/Mature Eggplant | 0.42835 | 0.057 |
Ripe Pepper/Ripe Tomato | 49.6438 | 0.256 |
Mature Eggplant/Ripe Tomato | 26.9702 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.84379 | |
1-1-2/M82 | 0.93637 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.84693 | |
1-3/M82 | 0.77551 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.86332 | 0.501 |
3-2/M82 | 0.75175 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.82066 | 1 |
4-3-2/M82 | 1.01845 | 1 |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.88137 | 0.447 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.92755 | 1 |
7-2/M82 | 0.87654 | 0.599 |
9-3-2/M82 | 0.85493 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.95701 | 1 |
IL2-6/WTpooled | 1.27274 | 0.46 |
IL7-5/WTpooled | 1.38838 | |
IL7-3/WTpooled | 1.08413 | 1 |
IL12-4/WTpooled | 0.9565 | 1 |
IL1-4/WTpooled | 1.05907 | 1 |
WT/WTpooled | 0.94729 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.01914 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.89015 | 0.941 |
DC3000/delta hrp 6h | 0.92145 | 0.95 |
DC3000/delta hrp 12h | 0.76666 | 1 |
DC3000/delta hrp 24h | 0.61495 | 0.038 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.68141 | 0.023 |
DC3000 delta B/DC3000 delta AB | 0.76934 | 0.027 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.95146 | 1 |
Exp 36h | 0.6394 | 0.434 |
Exp 60h | 0.56533 | 0.249 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96276 | 1 |
Var 0h | 0.4913 | 1 |
Var 12h I row2-row1 | 0.72196 | 0.338 |
Var 12h NI row2-row1 | 1.02408 | 1 |
Var 36h I row2-row1 | 0.94803 | 1 |
Var 36h NI row2-row1 | 1.2635 | 1 |
Var 60h I row2-row1 | 0.8967 | 0.285 |
Var 60h NI row2-row1 | 1.07383 | 1 |
Time course 0hI-0hNI | 0.85342 | 0.166 |
Time course 12hI-12hNI | 1.02447 | 0.818 |
Time course 36hI-36hNI | 0.93382 | 0.179 |
Time course 60hI-60hNI | 0.32835 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.84721 | 0.454 |
transgenic ySAMdc/azygous control (breaker) | 1.36299 | 1 |
transgenic ySAMdc/azygous control (red) | 0.93771 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.7448 | 0.115 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 6.31993 | 0.231 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.57767 | 0.087 |
Manapal/WT (break) | 1.65763 | 0.381 |
Manapal/WT (red) | 4.15848 | 0.15 |
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