Expression of 1-1-6.1.3.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.84393 | 0.303 |
27DAP/17DAP | 0.86596 | 0.67 |
39DAP/27DAP | 0.77093 | 0.361 |
41DAP/39DAP | 1.08196 | 1 |
42DAP/41DAP | 1.59326 | 0.863 |
43DAP/42DAP | 0.95293 | 0.864 |
47DAP/43DAP | 1.18557 | 0.68 |
52DAP/47DAP | 1.13475 | 0.758 |
57DAP/52DAP | 1.26702 | 0.735 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12798 | 0.162 |
17DAP/reference | 0.84837 | 0.278 |
27DAP/reference | 0.90014 | 0.05 |
39DAP/reference | 0.82382 | 0.06 |
41DAP/reference | 0.98486 | 0.814 |
42DAP/reference | 0.9576 | 0.233 |
43DAP/reference | 0.50419 | 0.429 |
47DAP/reference | 0.77061 | 0.002 |
52DAP/reference | 0.76576 | 0.019 |
57DAP/reference | 0.46133 | 0.007 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93227 | 0.454 |
27DAP/17DAP | 1.01465 | 0.96 |
39DAP/27DAP | 0.97766 | 0.87 |
41DAP/39DAP | 1.06142 | 0.887 |
42DAP/41DAP | 1.00269 | 0.884 |
43DAP/42DAP | 1.06881 | 0.446 |
47DAP/43DAP | 0.97222 | 0.796 |
52DAP/47DAP | 1.01769 | 0.933 |
57DAP/52DAP | 1.03113 | 0.856 |
57DAP/7DAP | 1.00867 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04447 | 0.776 |
17DAP/reference | 0.92171 | 0.253 |
27DAP/reference | 1.02373 | 1 |
39DAP/reference | 0.93757 | 0.264 |
41DAP/reference | 0.99061 | 0.589 |
42DAP/reference | 0.84933 | 0.07 |
43DAP/reference | 1.00778 | 0.764 |
47DAP/reference | 0.99146 | 0.671 |
52DAP/reference | 0.91999 | 0.106 |
57DAP/reference | 0.90198 | 0.086 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19378 | 0.069 |
17DAP/reference | 1.09193 | 0.094 |
27DAP/reference | 1.2089 | 0.136 |
39DAP/reference | 1.2295 | 0.164 |
41DAP/reference | 1.18899 | 0.099 |
42DAP/reference | 1.04572 | 1 |
43DAP/reference | 0.93126 | 0.344 |
47DAP/reference | 1.0724 | 0.603 |
52DAP/reference | 1.06669 | 0.471 |
57DAP/reference | 1.12682 | 0.398 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07643 | 0.408 |
17DAP/reference | 0.96126 | 0.624 |
27DAP/reference | 0.99529 | 0.727 |
39DAP/reference | 0.95473 | 0.43 |
41DAP/reference | 1.1057 | 0.296 |
42DAP/reference | 1.13036 | 0.356 |
43DAP/reference | 1.02373 | 1 |
47DAP/reference | 1.06474 | 0.655 |
52DAP/reference | 1.12694 | 0.457 |
57DAP/reference | 1.89664 | 0.007 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94487 | 1 |
26DAP/20DAP | 0.86481 | 0.317 |
34DAP/26DAP | 1.05729 | 1 |
51DAP/34DAP | 0.94743 | 0.571 |
52DAP/51DAP | 0.94922 | 0.151 |
53DAP/52DAP | 0.89417 | 0.417 |
55DAP/53DAP | 0.98432 | 0.838 |
57DAP/55DAP | 0.95714 | 0.799 |
62DAP/57DAP | 1.38053 | 0.833 |
68DAP/62DAP | 1.27476 | 0.132 |
68DAP/14DAP | 1.07953 | 0.541 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.97114 | 0.576 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.846 | 0.017 |
Immature Eggplant/Mature Eggplant | 1.95141 | |
Ripe Pepper/Ripe Tomato | 0.21864 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.60101 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.02066 | 1 |
12-2/M82 | 1.19735 | |
12-4/M82 | 0.8498 | 0.259 |
1-3/M82 | 1.95133 | |
2-1-1/M82 | 0.93864 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.31219 | |
3-2/M82 | 1.2916 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.23442 | |
4-3-2/M82 | 0.99177 | |
4-3/M82 | 1.28621 | 0.268 |
5-3/M82 | 0.84967 | |
6-2/M82 | 1.27531 | |
6-3/M82 | 1.27028 | |
7-1/M82 | 0.95857 | 1 |
7-2/M82 | 1.03357 | |
9-3-2/M82 | 0.9165 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.71243 | 0.243 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.14484 | 0.792 |
IL7-3/WTpooled | 2.11039 | |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.97582 | 1 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.90564 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.07987 | 0.823 |
DC3000/delta hrp 6h | 1.01529 | 1 |
DC3000/delta hrp 12h | 1.14976 | 1 |
DC3000/delta hrp 24h | 0.94103 | 0.618 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.10857 | 0.25 |
DC3000 delta B/DC3000 delta AB | 1.0611 | 0.565 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98565 | 1 |
Exp 36h | 1.07024 | 0.693 |
Exp 60h | 0.76655 | 0.386 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98004 | 1 |
Var 0h | 1.04771 | 0.98 |
Var 12h I row2-row1 | 0.97902 | 0.948 |
Var 12h NI row2-row1 | 0.8677 | 0.494 |
Var 36h I row2-row1 | 0.98119 | 1 |
Var 36h NI row2-row1 | 1.09016 | 1 |
Var 60h I row2-row1 | 1.80192 | 1 |
Var 60h NI row2-row1 | 1.32107 | 0.904 |
Time course 0hI-0hNI | 1.03872 | 0.852 |
Time course 12hI-12hNI | 0.97684 | 0.806 |
Time course 36hI-36hNI | 0.91847 | 0.129 |
Time course 60hI-60hNI | 0.78324 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.37622 | 0.331 |
transgenic ySAMdc/azygous control (breaker) | 0.92944 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.99036 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.09005 | 0.042 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.66074 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.07908 | 1 |
Manapal/WT (break) | 1.15374 | 1 |
Manapal/WT (red) | 0.95462 | 0.607 |
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