Expression of 1-1-6.1.3.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.843930.303
27DAP/17DAP0.865960.67
39DAP/27DAP0.770930.361
41DAP/39DAP1.081961
42DAP/41DAP1.593260.863
43DAP/42DAP0.952930.864
47DAP/43DAP1.185570.68
52DAP/47DAP1.134750.758
57DAP/52DAP1.267020.735

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.127980.162
17DAP/reference0.848370.278
27DAP/reference0.900140.05
39DAP/reference0.823820.06
41DAP/reference0.984860.814
42DAP/reference0.95760.233
43DAP/reference0.504190.429
47DAP/reference0.770610.002
52DAP/reference0.765760.019
57DAP/reference0.461330.007

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.932270.454
27DAP/17DAP1.014650.96
39DAP/27DAP0.977660.87
41DAP/39DAP1.061420.887
42DAP/41DAP1.002690.884
43DAP/42DAP1.068810.446
47DAP/43DAP0.972220.796
52DAP/47DAP1.017690.933
57DAP/52DAP1.031130.856
57DAP/7DAP1.008671

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.044470.776
17DAP/reference0.921710.253
27DAP/reference1.023731
39DAP/reference0.937570.264
41DAP/reference0.990610.589
42DAP/reference0.849330.07
43DAP/reference1.007780.764
47DAP/reference0.991460.671
52DAP/reference0.919990.106
57DAP/reference0.901980.086

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.193780.069
17DAP/reference1.091930.094
27DAP/reference1.20890.136
39DAP/reference1.22950.164
41DAP/reference1.188990.099
42DAP/reference1.045721
43DAP/reference0.931260.344
47DAP/reference1.07240.603
52DAP/reference1.066690.471
57DAP/reference1.126820.398

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.076430.408
17DAP/reference0.961260.624
27DAP/reference0.995290.727
39DAP/reference0.954730.43
41DAP/reference1.10570.296
42DAP/reference1.130360.356
43DAP/reference1.023731
47DAP/reference1.064740.655
52DAP/reference1.126940.457
57DAP/reference1.896640.007

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.944871
26DAP/20DAP0.864810.317
34DAP/26DAP1.057291
51DAP/34DAP0.947430.571
52DAP/51DAP0.949220.151
53DAP/52DAP0.894170.417
55DAP/53DAP0.984320.838
57DAP/55DAP0.957140.799
62DAP/57DAP1.380530.833
68DAP/62DAP1.274760.132
68DAP/14DAP1.079530.541

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.971140.576

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.8460.017
Immature Eggplant/Mature Eggplant1.95141
Ripe Pepper/Ripe Tomato0.218640.293
Mature Eggplant/Ripe Tomato0.601011

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.020661
12-2/M821.19735
12-4/M820.84980.259
1-3/M821.95133
2-1-1/M820.93864
2-1/M82N/AN/A
2-6/M821.31219
3-2/M821.2916
4-1-1/M82N/AN/A
4-1/M820.23442
4-3-2/M820.99177
4-3/M821.286210.268
5-3/M820.84967
6-2/M821.27531
6-3/M821.27028
7-1/M820.958571
7-2/M821.03357
9-3-2/M820.91651

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.712430.243
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.144840.792
IL7-3/WTpooled2.11039
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.975821
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.905640.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.079870.823
DC3000/delta hrp 6h1.015291
DC3000/delta hrp 12h1.149761
DC3000/delta hrp 24h0.941030.618

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.108570.25
DC3000 delta B/DC3000 delta AB1.06110.565

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.985651
Exp 36h1.070240.693
Exp 60h0.766550.386

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.980041
Var 0h1.047710.98
Var 12h I row2-row10.979020.948
Var 12h NI row2-row10.86770.494
Var 36h I row2-row10.981191
Var 36h NI row2-row11.090161
Var 60h I row2-row11.801921
Var 60h NI row2-row11.321070.904
Time course 0hI-0hNI1.038720.852
Time course 12hI-12hNI0.976840.806
Time course 36hI-36hNI0.918470.129
Time course 60hI-60hNI0.783240.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.376220.331
transgenic ySAMdc/azygous control (breaker)0.929440.49
transgenic ySAMdc/azygous control (red)0.990361

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.090050.042

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.660740.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.079081
Manapal/WT (break)1.153741
Manapal/WT (red)0.954620.607