Expression of 1-1-6.1.4.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.112271
27DAP/17DAP1.2410.844
39DAP/27DAP1.263650.481
41DAP/39DAP0.80550.409
42DAP/41DAP0.703620.774
43DAP/42DAP0.894940.822
47DAP/43DAP1.134780.999
52DAP/47DAP1.313280.53
57DAP/52DAP1.091090.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.028741
17DAP/reference1.249420.017
27DAP/reference1.048630.569
39DAP/reference1.246450.059
41DAP/reference1.367070.013
42DAP/reference1.257240.003
43DAP/reference1.026320.812
47DAP/reference0.973150.366
52DAP/reference0.788340.062
57DAP/reference0.799360.018

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.578110.414
27DAP/17DAP0.807470.295
39DAP/27DAP1.17280.347
41DAP/39DAP1.308730.579
42DAP/41DAP1.075360.925
43DAP/42DAP0.92990.576
47DAP/43DAP1.216910.485
52DAP/47DAP0.984310.925
57DAP/52DAP1.26690.272
57DAP/7DAP1.463661

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.956910.361
17DAP/reference0.83980.035
27DAP/reference0.879930.018
39DAP/reference0.943040.264
41DAP/reference1.258380.177
42DAP/reference0.894090.07
43DAP/reference0.891710.166
47DAP/reference0.845460.079
52DAP/reference0.772240.072
57DAP/reference0.809440.018

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.010020.965
17DAP/reference1.424950.12
27DAP/reference1.285660.12
39DAP/reference1.737290.04
41DAP/reference1.224670.536
42DAP/reference1.298960.233
43DAP/reference1.137920.268
47DAP/reference1.32030.074
52DAP/reference2.015730.008
57DAP/reference1.475580.024

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.907110.335
17DAP/reference1.11630.482
27DAP/reference1.103810.834
39DAP/reference1.101090.733
41DAP/reference1.020040.826
42DAP/reference1.1060.802
43DAP/reference1.013610.738
47DAP/reference0.915580.315
52DAP/reference0.937110.518
57DAP/reference0.721820.038

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.093090.966
26DAP/20DAP1.189610.905
34DAP/26DAP0.997570.972
51DAP/34DAP1.043380.978
52DAP/51DAP1.231010.446
53DAP/52DAP1.751650.06
55DAP/53DAP0.94470.698
57DAP/55DAP0.904040.647
62DAP/57DAP3.350320.515
68DAP/62DAP0.832660.505
68DAP/14DAP0.798110.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.188110.7

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.8050.016
Immature Eggplant/Mature Eggplant0.246420.057
Ripe Pepper/Ripe Tomato0.027841
Mature Eggplant/Ripe Tomato0.466280.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.90643
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.94028
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.186390.659
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.966890.418
IL12-4/WTpooled0.916750.71
IL1-4/WTpooled1.04788
WT/WTpooled1.007321

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.31041

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.129010.846
DC3000/delta hrp 6h1.208981
DC3000/delta hrp 12h1.09981
DC3000/delta hrp 24h0.967760.808

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.02611
Exp 36h0.941080.82
Exp 60h0.767840.278

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.004511
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.934320.315
transgenic ySAMdc/azygous control (breaker)0.817940.15
transgenic ySAMdc/azygous control (red)1.046610.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.91270.077

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.022031

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.261360.14
Manapal/WT (break)0.661690.333
Manapal/WT (red)1.209651