Expression of 1-1-6.1.4.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11227 | 1 |
27DAP/17DAP | 1.241 | 0.844 |
39DAP/27DAP | 1.26365 | 0.481 |
41DAP/39DAP | 0.8055 | 0.409 |
42DAP/41DAP | 0.70362 | 0.774 |
43DAP/42DAP | 0.89494 | 0.822 |
47DAP/43DAP | 1.13478 | 0.999 |
52DAP/47DAP | 1.31328 | 0.53 |
57DAP/52DAP | 1.09109 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02874 | 1 |
17DAP/reference | 1.24942 | 0.017 |
27DAP/reference | 1.04863 | 0.569 |
39DAP/reference | 1.24645 | 0.059 |
41DAP/reference | 1.36707 | 0.013 |
42DAP/reference | 1.25724 | 0.003 |
43DAP/reference | 1.02632 | 0.812 |
47DAP/reference | 0.97315 | 0.366 |
52DAP/reference | 0.78834 | 0.062 |
57DAP/reference | 0.79936 | 0.018 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.57811 | 0.414 |
27DAP/17DAP | 0.80747 | 0.295 |
39DAP/27DAP | 1.1728 | 0.347 |
41DAP/39DAP | 1.30873 | 0.579 |
42DAP/41DAP | 1.07536 | 0.925 |
43DAP/42DAP | 0.9299 | 0.576 |
47DAP/43DAP | 1.21691 | 0.485 |
52DAP/47DAP | 0.98431 | 0.925 |
57DAP/52DAP | 1.2669 | 0.272 |
57DAP/7DAP | 1.46366 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95691 | 0.361 |
17DAP/reference | 0.8398 | 0.035 |
27DAP/reference | 0.87993 | 0.018 |
39DAP/reference | 0.94304 | 0.264 |
41DAP/reference | 1.25838 | 0.177 |
42DAP/reference | 0.89409 | 0.07 |
43DAP/reference | 0.89171 | 0.166 |
47DAP/reference | 0.84546 | 0.079 |
52DAP/reference | 0.77224 | 0.072 |
57DAP/reference | 0.80944 | 0.018 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01002 | 0.965 |
17DAP/reference | 1.42495 | 0.12 |
27DAP/reference | 1.28566 | 0.12 |
39DAP/reference | 1.73729 | 0.04 |
41DAP/reference | 1.22467 | 0.536 |
42DAP/reference | 1.29896 | 0.233 |
43DAP/reference | 1.13792 | 0.268 |
47DAP/reference | 1.3203 | 0.074 |
52DAP/reference | 2.01573 | 0.008 |
57DAP/reference | 1.47558 | 0.024 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90711 | 0.335 |
17DAP/reference | 1.1163 | 0.482 |
27DAP/reference | 1.10381 | 0.834 |
39DAP/reference | 1.10109 | 0.733 |
41DAP/reference | 1.02004 | 0.826 |
42DAP/reference | 1.106 | 0.802 |
43DAP/reference | 1.01361 | 0.738 |
47DAP/reference | 0.91558 | 0.315 |
52DAP/reference | 0.93711 | 0.518 |
57DAP/reference | 0.72182 | 0.038 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09309 | 0.966 |
26DAP/20DAP | 1.18961 | 0.905 |
34DAP/26DAP | 0.99757 | 0.972 |
51DAP/34DAP | 1.04338 | 0.978 |
52DAP/51DAP | 1.23101 | 0.446 |
53DAP/52DAP | 1.75165 | 0.06 |
55DAP/53DAP | 0.9447 | 0.698 |
57DAP/55DAP | 0.90404 | 0.647 |
62DAP/57DAP | 3.35032 | 0.515 |
68DAP/62DAP | 0.83266 | 0.505 |
68DAP/14DAP | 0.79811 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.18811 | 0.7 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.805 | 0.016 |
Immature Eggplant/Mature Eggplant | 0.24642 | 0.057 |
Ripe Pepper/Ripe Tomato | 0.02784 | 1 |
Mature Eggplant/Ripe Tomato | 0.46628 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.90643 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.94028 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.18639 | 0.659 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.96689 | 0.418 |
IL12-4/WTpooled | 0.91675 | 0.71 |
IL1-4/WTpooled | 1.04788 | |
WT/WTpooled | 1.00732 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.3104 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.12901 | 0.846 |
DC3000/delta hrp 6h | 1.20898 | 1 |
DC3000/delta hrp 12h | 1.0998 | 1 |
DC3000/delta hrp 24h | 0.96776 | 0.808 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.0261 | 1 |
Exp 36h | 0.94108 | 0.82 |
Exp 60h | 0.76784 | 0.278 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.00451 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.93432 | 0.315 |
transgenic ySAMdc/azygous control (breaker) | 0.81794 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.04661 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9127 | 0.077 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.02203 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.26136 | 0.14 |
Manapal/WT (break) | 0.66169 | 0.333 |
Manapal/WT (red) | 1.20965 | 1 |
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