Tomato Functional Genomics Database (TFGD)

Expression of 1-1-6.1.4.8

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.87451	0.357
27DAP/17DAP	0.98502	0.963
39DAP/27DAP	0.85147	0.529
41DAP/39DAP	0.76291	0.169
42DAP/41DAP	1.0622	0.882
43DAP/42DAP	0.91357	0.765
47DAP/43DAP	1.06263	0.689
52DAP/47DAP	1.10901	0.953
57DAP/52DAP	1.0484	0.987

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.18804	0.17
17DAP/reference	1.07467	0.057
27DAP/reference	1.22155	0.073
39DAP/reference	1.08168	0.534
41DAP/reference	1.03312	0.667
42DAP/reference	1.00985	0.665
43DAP/reference	1.14325	0.012
47DAP/reference	1.32534	0.001
52DAP/reference	1.30537	0.041
57DAP/reference	1.64109	0.008

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.9996	0.871
27DAP/17DAP	0.98571	0.919
39DAP/27DAP	1.04537	0.626
41DAP/39DAP	1.13167	0.719
42DAP/41DAP	0.94987	0.612
43DAP/42DAP	0.7218	0.022
47DAP/43DAP	1.11803	0.471
52DAP/47DAP	0.99862	0.969
57DAP/52DAP	0.96122	0.68
57DAP/7DAP	0.90021	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.23992	0.227
17DAP/reference	1.01616	1
27DAP/reference	1.08002	0.371
39DAP/reference	1.13435	0.21
41DAP/reference	1.35293	0.09
42DAP/reference	1.03296	1
43DAP/reference	0.92238	0.192
47DAP/reference	1.01393	0.965
52DAP/reference	1.11038	0.015
57DAP/reference	1.18323	0.125

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.02453	0.884
17DAP/reference	0.96548	0.548
27DAP/reference	1.15393	0.244
39DAP/reference	1.06314	1
41DAP/reference	0.99039	0.601
42DAP/reference	1.17492	0.027
43DAP/reference	1.0611	0.919
47DAP/reference	1.23884	0.01
52DAP/reference	0.87175	0.187
57DAP/reference	0.71683	0.068

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.21439	0.081
17DAP/reference	0.92398	0.217
27DAP/reference	0.9692	0.465
39DAP/reference	0.91659	0.246
41DAP/reference	0.93875	0.264
42DAP/reference	1.15123	0.131
43DAP/reference	1.06643	0.515
47DAP/reference	1.02472	1
52DAP/reference	1.35203	0.116
57DAP/reference	1.49133	0.01

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.98497	1
26DAP/20DAP	1.35307	0.152
34DAP/26DAP	0.93258	0.879
51DAP/34DAP	1.01666	0.925
52DAP/51DAP	0.7791	0.151
53DAP/52DAP	0.93592	0.75
55DAP/53DAP	0.86605	0.263
57DAP/55DAP	1.37391	0.249
62DAP/57DAP	1.76601	0.767
68DAP/62DAP	1.18146	0.713
68DAP/14DAP	1.07113	1

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.08625	0.198

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	0.81591	0.272
Mature Green Tomato/Ripe Tomato	1.47466	0.036
Immature Eggplant/Mature Eggplant	1.25154	0.066
Ripe Pepper/Ripe Tomato	1.51949	0.258
Mature Eggplant/Ripe Tomato	1.85643	0.26

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	0.8842	0.944
1-1-2/M82	1.12662	1
12-2/M82	0.76181	0.692
12-4/M82	0.79399	0.619
1-3/M82	2.22266	0.26
2-1-1/M82	0.89843	0.92
2-1/M82	0.90993	0.345
2-6/M82	0.90957	1
3-2/M82	0.97602
4-1-1/M82	1.02587	1
4-1/M82	0.84037	0.737
4-3-2/M82	1.31434	0.508
4-3/M82	1.24255	1
5-3/M82	1.13452	0.572
6-2/M82	0.90336	1
6-3/M82	0.90272	1
7-1/M82	1.08846	0.87
7-2/M82	1.19065	1
9-3-2/M82	1.11428	1

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	3.08333	0.427
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	0.84002
IL12-4/WTpooled	0.95643	1
IL1-4/WTpooled	0.93036
WT/WTpooled	1.00596	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.10778	0.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.07551	0.921
DC3000/delta hrp 6h	1.13139	1
DC3000/delta hrp 12h	0.98583	1
DC3000/delta hrp 24h	1.03317	0.728

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	1.05022	0.515
DC3000 delta B/DC3000 delta AB	1.19032	0.17

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	0.96724	1
Exp 36h	1.11191	1
Exp 60h	1.09599	1

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	1.00227	1
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.97888	0.722
transgenic ySAMdc/azygous control (breaker)	1.21749	0.248
transgenic ySAMdc/azygous control (red)	1.13182	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.13416	0.185

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.9954	0.789

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.00085	1
Manapal/WT (break)	1.1337	1
Manapal/WT (red)	1.34009	0.133