Expression of 1-1-6.1.6.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94781 | 0.671 |
27DAP/17DAP | 0.91983 | 0.839 |
39DAP/27DAP | 1.35569 | 0.56 |
41DAP/39DAP | 1.0434 | 0.868 |
42DAP/41DAP | 1.03464 | 1 |
43DAP/42DAP | 1.10102 | 0.954 |
47DAP/43DAP | 1.11752 | 0.746 |
52DAP/47DAP | 0.87089 | 0.67 |
57DAP/52DAP | 0.86776 | 0.613 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97969 | 0.589 |
17DAP/reference | 1.08338 | 0.089 |
27DAP/reference | 0.97602 | 0.61 |
39DAP/reference | 1.00949 | 0.92 |
41DAP/reference | 1.14564 | 0.038 |
42DAP/reference | 0.84267 | 0.005 |
43DAP/reference | 0.97304 | 0.631 |
47DAP/reference | 0.9101 | 0.007 |
52DAP/reference | 0.86992 | 0.158 |
57DAP/reference | 0.80307 | 0.012 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99116 | 0.763 |
27DAP/17DAP | 0.84498 | 0.508 |
39DAP/27DAP | 0.92411 | 0.426 |
41DAP/39DAP | 1.08372 | 0.727 |
42DAP/41DAP | 1.06521 | 0.74 |
43DAP/42DAP | 1.07462 | 0.351 |
47DAP/43DAP | 0.95008 | 0.559 |
52DAP/47DAP | 0.8786 | 0.507 |
57DAP/52DAP | 0.94367 | 0.612 |
57DAP/7DAP | 1.28353 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.42738 | 0.032 |
17DAP/reference | 1.08606 | 0.688 |
27DAP/reference | 1.13595 | 0.371 |
39DAP/reference | 0.969 | 0.411 |
41DAP/reference | 0.98302 | 0.589 |
42DAP/reference | 0.94403 | 0.262 |
43DAP/reference | 1.16126 | 0.167 |
47DAP/reference | 0.93042 | 0.504 |
52DAP/reference | 0.98788 | 0.621 |
57DAP/reference | 1.16955 | 0.41 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0568 | 0.712 |
17DAP/reference | 0.93432 | 0.347 |
27DAP/reference | 0.84042 | 0.1 |
39DAP/reference | 0.86154 | 0.048 |
41DAP/reference | 0.84215 | 0.048 |
42DAP/reference | 0.82183 | 0.061 |
43DAP/reference | 1.01483 | 0.814 |
47DAP/reference | 0.8539 | 0.027 |
52DAP/reference | 0.89413 | 0.239 |
57DAP/reference | 1.31748 | 0.193 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97653 | 0.526 |
17DAP/reference | 1.01066 | 0.886 |
27DAP/reference | 1.02696 | 0.883 |
39DAP/reference | 1.02156 | 0.813 |
41DAP/reference | 1.05882 | 1 |
42DAP/reference | 0.91589 | 0.445 |
43DAP/reference | 0.77364 | 0.11 |
47DAP/reference | 0.8121 | 0.191 |
52DAP/reference | 0.96927 | 0.637 |
57DAP/reference | 0.57475 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02177 | 1 |
26DAP/20DAP | 1.67883 | 0.145 |
34DAP/26DAP | 0.83017 | 0.431 |
51DAP/34DAP | 1.34514 | 0.314 |
52DAP/51DAP | 0.93202 | 1 |
53DAP/52DAP | 1.03298 | 0.935 |
55DAP/53DAP | 0.90578 | 0.619 |
57DAP/55DAP | 1.00069 | 0.94 |
62DAP/57DAP | 1.05797 | |
68DAP/62DAP | 1.0191 | 0.95 |
68DAP/14DAP | 0.88256 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.12849 | 0.558 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.3447 | |
Mature Green Tomato/Ripe Tomato | 1.01986 | 0.898 |
Immature Eggplant/Mature Eggplant | 1.07271 | 0.3 |
Ripe Pepper/Ripe Tomato | 0.8408 | 1 |
Mature Eggplant/Ripe Tomato | 0.77463 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05932 | 1 |
1-1-2/M82 | 1.01524 | |
12-2/M82 | 0.84786 | 0.678 |
12-4/M82 | 0.98638 | 1 |
1-3/M82 | 1.29154 | 0.26 |
2-1-1/M82 | 1.00283 | 1 |
2-1/M82 | 1.14198 | |
2-6/M82 | 1.10737 | 0.594 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.1258 | 1 |
4-1/M82 | 1.23422 | 1 |
4-3-2/M82 | 1.25487 | 0.241 |
4-3/M82 | 1.34913 | 1 |
5-3/M82 | 1.03288 | 1 |
6-2/M82 | 1.30016 | 0.253 |
6-3/M82 | 1.03444 | 1 |
7-1/M82 | 0.82694 | 0.476 |
7-2/M82 | 1.15055 | 0.291 |
9-3-2/M82 | 1.5785 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.09308 | 0.493 |
IL2-6/WTpooled | 1.31395 | 0.456 |
IL7-5/WTpooled | 1.22659 | 0.75 |
IL7-3/WTpooled | 0.94957 | 1 |
IL12-4/WTpooled | 1.06644 | 0.839 |
IL1-4/WTpooled | 0.96533 | 0.834 |
WT/WTpooled | 0.88227 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.96143 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98691 | 1 |
DC3000/delta hrp 6h | 1.03033 | 0.95 |
DC3000/delta hrp 12h | 1.00283 | 1 |
DC3000/delta hrp 24h | 1.1026 | 0.516 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.03543 | 0.748 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.03657 | 1 |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02094 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 0.9513 | 0.627 |
Var 12h NI row2-row1 | 1.24602 | 0.649 |
Var 36h I row2-row1 | 1.01198 | 1 |
Var 36h NI row2-row1 | 0.91739 | 0.743 |
Var 60h I row2-row1 | 0.73176 | 0.374 |
Var 60h NI row2-row1 | 0.9707 | 1 |
Time course 0hI-0hNI | 0.96484 | 0.738 |
Time course 12hI-12hNI | 0.9414 | 0.458 |
Time course 36hI-36hNI | 1.09837 | 0.101 |
Time course 60hI-60hNI | 1.79903 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.06972 | 0.305 |
transgenic ySAMdc/azygous control (breaker) | 1.09932 | 1 |
transgenic ySAMdc/azygous control (red) | 1.03898 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99128 | 0.737 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.37419 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.26862 | 0.105 |
Manapal/WT (break) | 1.12685 | 1 |
Manapal/WT (red) | 0.91205 | 0.607 |
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