Expression of 1-1-6.1.6.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.947810.671
27DAP/17DAP0.919830.839
39DAP/27DAP1.355690.56
41DAP/39DAP1.04340.868
42DAP/41DAP1.034641
43DAP/42DAP1.101020.954
47DAP/43DAP1.117520.746
52DAP/47DAP0.870890.67
57DAP/52DAP0.867760.613

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.979690.589
17DAP/reference1.083380.089
27DAP/reference0.976020.61
39DAP/reference1.009490.92
41DAP/reference1.145640.038
42DAP/reference0.842670.005
43DAP/reference0.973040.631
47DAP/reference0.91010.007
52DAP/reference0.869920.158
57DAP/reference0.803070.012

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.991160.763
27DAP/17DAP0.844980.508
39DAP/27DAP0.924110.426
41DAP/39DAP1.083720.727
42DAP/41DAP1.065210.74
43DAP/42DAP1.074620.351
47DAP/43DAP0.950080.559
52DAP/47DAP0.87860.507
57DAP/52DAP0.943670.612
57DAP/7DAP1.28353

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.427380.032
17DAP/reference1.086060.688
27DAP/reference1.135950.371
39DAP/reference0.9690.411
41DAP/reference0.983020.589
42DAP/reference0.944030.262
43DAP/reference1.161260.167
47DAP/reference0.930420.504
52DAP/reference0.987880.621
57DAP/reference1.169550.41

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.05680.712
17DAP/reference0.934320.347
27DAP/reference0.840420.1
39DAP/reference0.861540.048
41DAP/reference0.842150.048
42DAP/reference0.821830.061
43DAP/reference1.014830.814
47DAP/reference0.85390.027
52DAP/reference0.894130.239
57DAP/reference1.317480.193

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.976530.526
17DAP/reference1.010660.886
27DAP/reference1.026960.883
39DAP/reference1.021560.813
41DAP/reference1.058821
42DAP/reference0.915890.445
43DAP/reference0.773640.11
47DAP/reference0.81210.191
52DAP/reference0.969270.637
57DAP/reference0.574750.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.021771
26DAP/20DAP1.678830.145
34DAP/26DAP0.830170.431
51DAP/34DAP1.345140.314
52DAP/51DAP0.932021
53DAP/52DAP1.032980.935
55DAP/53DAP0.905780.619
57DAP/55DAP1.000690.94
62DAP/57DAP1.05797
68DAP/62DAP1.01910.95
68DAP/14DAP0.882561

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.128490.558

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.3447
Mature Green Tomato/Ripe Tomato1.019860.898
Immature Eggplant/Mature Eggplant1.072710.3
Ripe Pepper/Ripe Tomato0.84081
Mature Eggplant/Ripe Tomato0.774631

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.059321
1-1-2/M821.01524
12-2/M820.847860.678
12-4/M820.986381
1-3/M821.291540.26
2-1-1/M821.002831
2-1/M821.14198
2-6/M821.107370.594
3-2/M82N/AN/A
4-1-1/M821.12581
4-1/M821.234221
4-3-2/M821.254870.241
4-3/M821.349131
5-3/M821.032881
6-2/M821.300160.253
6-3/M821.034441
7-1/M820.826940.476
7-2/M821.150550.291
9-3-2/M821.57851

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.093080.493
IL2-6/WTpooled1.313950.456
IL7-5/WTpooled1.226590.75
IL7-3/WTpooled0.949571
IL12-4/WTpooled1.066440.839
IL1-4/WTpooled0.965330.834
WT/WTpooled0.882271

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.961430.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.986911
DC3000/delta hrp 6h1.030330.95
DC3000/delta hrp 12h1.002831
DC3000/delta hrp 24h1.10260.516

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.035430.748

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.036571
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.020941
Var 0hN/AN/A
Var 12h I row2-row10.95130.627
Var 12h NI row2-row11.246020.649
Var 36h I row2-row11.011981
Var 36h NI row2-row10.917390.743
Var 60h I row2-row10.731760.374
Var 60h NI row2-row10.97071
Time course 0hI-0hNI0.964840.738
Time course 12hI-12hNI0.94140.458
Time course 36hI-36hNI1.098370.101
Time course 60hI-60hNI1.799030.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.069720.305
transgenic ySAMdc/azygous control (breaker)1.099321
transgenic ySAMdc/azygous control (red)1.038981

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.991280.737

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.374190.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.268620.105
Manapal/WT (break)1.126851
Manapal/WT (red)0.912050.607