Expression of 1-1-6.1.6.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.236790.452
27DAP/17DAP1.269450.742
39DAP/27DAP1.235440.685
41DAP/39DAP1.116450.498
42DAP/41DAP1.120260.931
43DAP/42DAP1.009220.937
47DAP/43DAP1.066760.842
52DAP/47DAP1.275920.953
57DAP/52DAP1.078760.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.921780.118
17DAP/reference1.034830.74
27DAP/reference1.041950.559
39DAP/reference0.991780.885
41DAP/reference1.01860.963
42DAP/reference0.958310.163
43DAP/reference1.074360.36
47DAP/reference0.934720.191
52DAP/reference0.959410.438
57DAP/reference1.039030.762

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.976370.716
27DAP/17DAP0.99880.969
39DAP/27DAP1.051070.659
41DAP/39DAP1.072210.896
42DAP/41DAP0.927310.56
43DAP/42DAP1.163810.061
47DAP/43DAP0.968360.722
52DAP/47DAP1.047840.819
57DAP/52DAP0.892270.088
57DAP/7DAP1.118271

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.934050.296
17DAP/reference0.892530.22
27DAP/reference1.023241
39DAP/reference1.146570.073
41DAP/reference1.142180.28
42DAP/reference1.03881
43DAP/reference1.004780.694
47DAP/reference0.924370.383
52DAP/reference1.003460.74
57DAP/reference1.028881

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.995380.884
17DAP/reference0.941130.357
27DAP/reference1.072410.583
39DAP/reference0.884820.085
41DAP/reference0.861610.169
42DAP/reference0.992630.433
43DAP/reference0.92220.336
47DAP/reference0.922150.188
52DAP/reference0.875790.171
57DAP/reference0.838510.259

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.088271
17DAP/reference1.041451
27DAP/reference0.943080.442
39DAP/reference1.11090.104
41DAP/reference0.914210.293
42DAP/reference0.986820.816
43DAP/reference0.961550.545
47DAP/reference1.06950.792
52DAP/reference0.935230.573
57DAP/reference0.99430.753

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.277330.966
26DAP/20DAP0.78190.317
34DAP/26DAP1.118270.819
51DAP/34DAP0.940590.624
52DAP/51DAP0.989861
53DAP/52DAP1.100920.458
55DAP/53DAP1.084710.382
57DAP/55DAP1.089360.666
62DAP/57DAPN/AN/A
68DAP/62DAP0.624640.195
68DAP/14DAP0.99111

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.778210.076

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.725840.268
Mature Green Tomato/Ripe Tomato1.332430.814
Immature Eggplant/Mature Eggplant0.851180.407
Ripe Pepper/Ripe Tomato0.727560.224
Mature Eggplant/Ripe Tomato0.811941

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.117821
1-1-2/M820.92741
12-2/M821.09656
12-4/M821.10642
1-3/M820.799770.378
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.83504
3-2/M820.72208
4-1-1/M82N/AN/A
4-1/M821.82251
4-3-2/M82N/AN/A
4-3/M821.081440.268
5-3/M821.023391
6-2/M820.92652
6-3/M821.027591
7-1/M821.015961
7-2/M821.01493
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.958041
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.85466
IL12-4/WTpooled0.740090.71
IL1-4/WTpooled0.9977
WT/WTpooled1.295480.957

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.173440.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.941991
DC3000/delta hrp 6h1.118451
DC3000/delta hrp 12h0.957311
DC3000/delta hrp 24h1.06450.535

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.79990.629
DC3000 delta B/DC3000 delta AB0.797810.027

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.026011
Exp 36h1.044251
Exp 60h1.02341

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.02881
Var 0h1.07191
Var 12h I row2-row10.984771
Var 12h NI row2-row10.780540.466
Var 36h I row2-row10.992661
Var 36h NI row2-row10.974840.852
Var 60h I row2-row11.677980.562
Var 60h NI row2-row11.313010.904
Time course 0hI-0hNI1.010321
Time course 12hI-12hNI0.999931
Time course 36hI-36hNI0.820870.023
Time course 60hI-60hNI0.738410.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.018690.863
transgenic ySAMdc/azygous control (breaker)1.327080.172
transgenic ySAMdc/azygous control (red)1.021270.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.999610.94

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.883850.308

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.154290.14
Manapal/WT (break)1.142981
Manapal/WT (red)1.077071