Expression of 1-1-6.1.6.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.19404 | 0.485 |
27DAP/17DAP | 1.12815 | 0.845 |
39DAP/27DAP | 1.17074 | 0.858 |
41DAP/39DAP | 0.89307 | 0.566 |
42DAP/41DAP | 0.96916 | 1 |
43DAP/42DAP | 1.18339 | 0.772 |
47DAP/43DAP | 1.20955 | 0.415 |
52DAP/47DAP | 1.0147 | 0.933 |
57DAP/52DAP | 1.00811 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90784 | 0.125 |
17DAP/reference | 1.21104 | 0.014 |
27DAP/reference | 1.00908 | 0.953 |
39DAP/reference | 1.06894 | 0.153 |
41DAP/reference | 1.16983 | 0.058 |
42DAP/reference | 1.02882 | 0.995 |
43DAP/reference | 1.14197 | 0.021 |
47DAP/reference | 1.32912 | 0.001 |
52DAP/reference | 1.06472 | 0.695 |
57DAP/reference | 1.05558 | 0.662 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.42483 | 0.041 |
27DAP/17DAP | 0.98402 | 0.919 |
39DAP/27DAP | 0.97207 | 0.784 |
41DAP/39DAP | 1.0198 | 1 |
42DAP/41DAP | 0.92071 | 0.425 |
43DAP/42DAP | 0.97283 | 0.684 |
47DAP/43DAP | 0.96547 | 0.823 |
52DAP/47DAP | 1.15364 | 0.519 |
57DAP/52DAP | 1.17243 | 0.35 |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04968 | 0.857 |
17DAP/reference | 1.22402 | 0.018 |
27DAP/reference | 1.10747 | 0.301 |
39DAP/reference | 1.11864 | 0.511 |
41DAP/reference | 1.06328 | 0.614 |
42DAP/reference | 1.60769 | 0.037 |
43DAP/reference | 1.18143 | 0.2 |
47DAP/reference | 1.35293 | 0.029 |
52DAP/reference | 1.16256 | 0.212 |
57DAP/reference | 1.3273 | 0.082 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9252 | 0.426 |
17DAP/reference | 0.9756 | 0.576 |
27DAP/reference | 0.81105 | 0.134 |
39DAP/reference | 0.84848 | 0.045 |
41DAP/reference | 0.83609 | 0.056 |
42DAP/reference | 0.81273 | 0.042 |
43DAP/reference | 1.09705 | 0.466 |
47DAP/reference | 0.88953 | 0.188 |
52DAP/reference | 0.79747 | 0.131 |
57DAP/reference | 1.08548 | 0.409 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91658 | 0.311 |
17DAP/reference | 1.0799 | 0.675 |
27DAP/reference | 1.37109 | 0.031 |
39DAP/reference | 1.12127 | 0.377 |
41DAP/reference | 1.10867 | 0.319 |
42DAP/reference | 1.02816 | 0.979 |
43DAP/reference | 1.02307 | 0.827 |
47DAP/reference | 1.39029 | 0.026 |
52DAP/reference | 1.23399 | 0.289 |
57DAP/reference | 0.77652 | 0.033 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00128 | 1 |
26DAP/20DAP | 1.00573 | 1 |
34DAP/26DAP | 1.27352 | 0.542 |
51DAP/34DAP | 1.30082 | 0.565 |
52DAP/51DAP | 0.96395 | 1 |
53DAP/52DAP | 1.2739 | 0.502 |
55DAP/53DAP | 0.86927 | 0.544 |
57DAP/55DAP | 0.93583 | 0.799 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 0.82751 | |
68DAP/14DAP | 0.99008 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.71979 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.75955 | 0.234 |
Mature Green Tomato/Ripe Tomato | 1.18606 | 0.69 |
Immature Eggplant/Mature Eggplant | 2.05443 | 0.055 |
Ripe Pepper/Ripe Tomato | 0.15172 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.24218 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.08525 | 0.536 |
1-1-2/M82 | 1.22788 | 1 |
12-2/M82 | 0.76516 | 0.74 |
12-4/M82 | 1.09675 | 1 |
1-3/M82 | 1.17482 | 0.479 |
2-1-1/M82 | 0.88077 | 0.683 |
2-1/M82 | 0.62202 | 0.322 |
2-6/M82 | 1.09838 | 0.695 |
3-2/M82 | 1.16914 | |
4-1-1/M82 | 1.09159 | 1 |
4-1/M82 | 1.08736 | |
4-3-2/M82 | 1.30657 | 0.508 |
4-3/M82 | 1.62444 | 1 |
5-3/M82 | 1.01839 | 1 |
6-2/M82 | 1.26681 | 1 |
6-3/M82 | 1.08484 | 1 |
7-1/M82 | 1.21402 | 0.87 |
7-2/M82 | 1.169 | 1 |
9-3-2/M82 | 1.46554 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.72539 | 1 |
IL7-5/WTpooled | 1.73206 | |
IL7-3/WTpooled | 0.9776 | 1 |
IL12-4/WTpooled | 0.94852 | 1 |
IL1-4/WTpooled | 0.82852 | 0.562 |
WT/WTpooled | 0.94362 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.97665 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.11378 | 0.894 |
DC3000/delta hrp 6h | 1.2275 | 1 |
DC3000/delta hrp 12h | 1.12658 | 1 |
DC3000/delta hrp 24h | 0.89122 | 0.152 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.91042 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.04549 | 1 |
Exp 36h | 1.17256 | 1 |
Exp 60h | 1.31501 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.94432 | 1 |
Var 0h | 0.86765 | 0.933 |
Var 12h I row2-row1 | 0.91187 | 0.338 |
Var 12h NI row2-row1 | 1.07762 | 1 |
Var 36h I row2-row1 | 1.06849 | 0.908 |
Var 36h NI row2-row1 | 1.04071 | 1 |
Var 60h I row2-row1 | 0.99015 | 1 |
Var 60h NI row2-row1 | 1.00274 | 1 |
Time course 0hI-0hNI | 0.98543 | 0.94 |
Time course 12hI-12hNI | 0.96222 | 0.698 |
Time course 36hI-36hNI | 1.03694 | 0.401 |
Time course 60hI-60hNI | 1.42278 | 0.012 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.139 | 0.331 |
transgenic ySAMdc/azygous control (breaker) | 0.51703 | 0.137 |
transgenic ySAMdc/azygous control (red) | 0.74874 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04999 | 0.092 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.00407 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.82951 | 0.172 |
Manapal/WT (break) | 1.06361 | 1 |
Manapal/WT (red) | 1.04763 | 1 |
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