Expression of 1-1-6.1.6.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.194040.485
27DAP/17DAP1.128150.845
39DAP/27DAP1.170740.858
41DAP/39DAP0.893070.566
42DAP/41DAP0.969161
43DAP/42DAP1.183390.772
47DAP/43DAP1.209550.415
52DAP/47DAP1.01470.933
57DAP/52DAP1.008110.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.907840.125
17DAP/reference1.211040.014
27DAP/reference1.009080.953
39DAP/reference1.068940.153
41DAP/reference1.169830.058
42DAP/reference1.028820.995
43DAP/reference1.141970.021
47DAP/reference1.329120.001
52DAP/reference1.064720.695
57DAP/reference1.055580.662

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.424830.041
27DAP/17DAP0.984020.919
39DAP/27DAP0.972070.784
41DAP/39DAP1.01981
42DAP/41DAP0.920710.425
43DAP/42DAP0.972830.684
47DAP/43DAP0.965470.823
52DAP/47DAP1.153640.519
57DAP/52DAP1.172430.35
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.049680.857
17DAP/reference1.224020.018
27DAP/reference1.107470.301
39DAP/reference1.118640.511
41DAP/reference1.063280.614
42DAP/reference1.607690.037
43DAP/reference1.181430.2
47DAP/reference1.352930.029
52DAP/reference1.162560.212
57DAP/reference1.32730.082

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.92520.426
17DAP/reference0.97560.576
27DAP/reference0.811050.134
39DAP/reference0.848480.045
41DAP/reference0.836090.056
42DAP/reference0.812730.042
43DAP/reference1.097050.466
47DAP/reference0.889530.188
52DAP/reference0.797470.131
57DAP/reference1.085480.409

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.916580.311
17DAP/reference1.07990.675
27DAP/reference1.371090.031
39DAP/reference1.121270.377
41DAP/reference1.108670.319
42DAP/reference1.028160.979
43DAP/reference1.023070.827
47DAP/reference1.390290.026
52DAP/reference1.233990.289
57DAP/reference0.776520.033

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.001281
26DAP/20DAP1.005731
34DAP/26DAP1.273520.542
51DAP/34DAP1.300820.565
52DAP/51DAP0.963951
53DAP/52DAP1.27390.502
55DAP/53DAP0.869270.544
57DAP/55DAP0.935830.799
62DAP/57DAPN/AN/A
68DAP/62DAP0.82751
68DAP/14DAP0.990081

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.719790.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.759550.234
Mature Green Tomato/Ripe Tomato1.186060.69
Immature Eggplant/Mature Eggplant2.054430.055
Ripe Pepper/Ripe Tomato0.151720.224
Mature Eggplant/Ripe Tomato0.242180.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.085250.536
1-1-2/M821.227881
12-2/M820.765160.74
12-4/M821.096751
1-3/M821.174820.479
2-1-1/M820.880770.683
2-1/M820.622020.322
2-6/M821.098380.695
3-2/M821.16914
4-1-1/M821.091591
4-1/M821.08736
4-3-2/M821.306570.508
4-3/M821.624441
5-3/M821.018391
6-2/M821.266811
6-3/M821.084841
7-1/M821.214020.87
7-2/M821.1691
9-3-2/M821.465541

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.725391
IL7-5/WTpooled1.73206
IL7-3/WTpooled0.97761
IL12-4/WTpooled0.948521
IL1-4/WTpooled0.828520.562
WT/WTpooled0.943621

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.976651

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.113780.894
DC3000/delta hrp 6h1.22751
DC3000/delta hrp 12h1.126581
DC3000/delta hrp 24h0.891220.152

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.91042

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.045491
Exp 36h1.172561
Exp 60h1.315010.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.944321
Var 0h0.867650.933
Var 12h I row2-row10.911870.338
Var 12h NI row2-row11.077621
Var 36h I row2-row11.068490.908
Var 36h NI row2-row11.040711
Var 60h I row2-row10.990151
Var 60h NI row2-row11.002741
Time course 0hI-0hNI0.985430.94
Time course 12hI-12hNI0.962220.698
Time course 36hI-36hNI1.036940.401
Time course 60hI-60hNI1.422780.012

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.1390.331
transgenic ySAMdc/azygous control (breaker)0.517030.137
transgenic ySAMdc/azygous control (red)0.748741

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.049990.092

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.004071

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.829510.172
Manapal/WT (break)1.063611
Manapal/WT (red)1.047631