Expression of 1-1-6.1.7.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.080010.697
27DAP/17DAP1.170630.804
39DAP/27DAP0.812270.425
41DAP/39DAP1.203270.352
42DAP/41DAP0.994091
43DAP/42DAP1.096590.949
47DAP/43DAP1.068540.842
52DAP/47DAP1.015180.983
57DAP/52DAP0.997960.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.06570.611
17DAP/reference1.200970.038
27DAP/reference1.09050.175
39DAP/reference1.139040.027
41DAP/reference1.188230.054
42DAP/reference0.954220.25
43DAP/reference1.076720.382
47DAP/reference1.180480.015
52DAP/reference0.980910.53
57DAP/reference0.94330.294

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.188530.278
27DAP/17DAP1.00910.943
39DAP/27DAP1.713850.043
41DAP/39DAP0.624230.02
42DAP/41DAP2.922060.002
43DAP/42DAP3.344710.013
47DAP/43DAP0.960120.815
52DAP/47DAP1.431730.319
57DAP/52DAP1.006330.869
57DAP/7DAP2.194960.204

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.414610.078
17DAP/reference1.390140.084
27DAP/reference1.311870.301
39DAP/reference1.131680.141
41DAP/reference1.431770.215
42DAP/reference1.043720.889
43DAP/reference1.225180.118
47DAP/reference1.149990.106
52DAP/reference0.992650.621
57DAP/reference1.061180.907

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.121340.577
17DAP/reference1.426340.043
27DAP/reference1.04161
39DAP/reference0.983910.509
41DAP/reference0.933070.268
42DAP/reference0.908160.15
43DAP/reference1.201960.308
47DAP/reference1.043090.498
52DAP/reference0.893110.187
57DAP/reference1.214930.104

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.138490.172
17DAP/reference1.009211
27DAP/reference1.091030.672
39DAP/reference1.206790.1
41DAP/reference1.350360.031
42DAP/reference1.147840.566
43DAP/reference1.293580.107
47DAP/reference1.13460.093
52DAP/reference1.380940.237
57DAP/reference0.85290.152

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.914431
26DAP/20DAP0.864731
34DAP/26DAP0.855370.771
51DAP/34DAP1.285250.1
52DAP/51DAP0.859241
53DAP/52DAP1.602820.082
55DAP/53DAP1.319150.608
57DAP/55DAP0.909540.647
62DAP/57DAP0.439480.003
68DAP/62DAP1.585390.813
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.086830.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.597390.017
Immature Eggplant/Mature Eggplant1.205330.157
Ripe Pepper/Ripe Tomato0.490120.293
Mature Eggplant/Ripe Tomato0.527870.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.117540.574
1-1-2/M821.060861
12-2/M821.120671
12-4/M821.07981
1-3/M820.780970.501
2-1-1/M821.049890.764
2-1/M820.783420.74
2-6/M821.285170.329
3-2/M820.33304
4-1-1/M820.889161
4-1/M820.814850.665
4-3-2/M820.876280.698
4-3/M821.361380.268
5-3/M820.785560.642
6-2/M821.042211
6-3/M821.053061
7-1/M820.898461
7-2/M821.252431
9-3-2/M821.106471

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.52711
IL2-6/WTpooled1.292050.659
IL7-5/WTpooled1.0235
IL7-3/WTpooled0.98671
IL12-4/WTpooled0.879581
IL1-4/WTpooled0.921951
WT/WTpooled0.976411

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.179751

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.854250.868
DC3000/delta hrp 6h0.970480.95
DC3000/delta hrp 12h0.974991
DC3000/delta hrp 24h0.712230.038

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.118091
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.040611
Var 0h0.9391
Var 12h I row2-row11.142790.379
Var 12h NI row2-row11.188740.649
Var 36h I row2-row11.063130.908
Var 36h NI row2-row11.025191
Var 60h I row2-row10.736730.292
Var 60h NI row2-row10.992531
Time course 0hI-0hNI1.015181
Time course 12hI-12hNI0.982790.889
Time course 36hI-36hNI1.140.019
Time course 60hI-60hNI2.345070.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.031740.921
transgenic ySAMdc/azygous control (breaker)1.013721
transgenic ySAMdc/azygous control (red)0.962811

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.030370.556

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.119520.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.919081
Manapal/WT (break)0.917141
Manapal/WT (red)1.114541