Expression of 1-1-6.1.7.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08001 | 0.697 |
27DAP/17DAP | 1.17063 | 0.804 |
39DAP/27DAP | 0.81227 | 0.425 |
41DAP/39DAP | 1.20327 | 0.352 |
42DAP/41DAP | 0.99409 | 1 |
43DAP/42DAP | 1.09659 | 0.949 |
47DAP/43DAP | 1.06854 | 0.842 |
52DAP/47DAP | 1.01518 | 0.983 |
57DAP/52DAP | 0.99796 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0657 | 0.611 |
17DAP/reference | 1.20097 | 0.038 |
27DAP/reference | 1.0905 | 0.175 |
39DAP/reference | 1.13904 | 0.027 |
41DAP/reference | 1.18823 | 0.054 |
42DAP/reference | 0.95422 | 0.25 |
43DAP/reference | 1.07672 | 0.382 |
47DAP/reference | 1.18048 | 0.015 |
52DAP/reference | 0.98091 | 0.53 |
57DAP/reference | 0.9433 | 0.294 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.18853 | 0.278 |
27DAP/17DAP | 1.0091 | 0.943 |
39DAP/27DAP | 1.71385 | 0.043 |
41DAP/39DAP | 0.62423 | 0.02 |
42DAP/41DAP | 2.92206 | 0.002 |
43DAP/42DAP | 3.34471 | 0.013 |
47DAP/43DAP | 0.96012 | 0.815 |
52DAP/47DAP | 1.43173 | 0.319 |
57DAP/52DAP | 1.00633 | 0.869 |
57DAP/7DAP | 2.19496 | 0.204 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.41461 | 0.078 |
17DAP/reference | 1.39014 | 0.084 |
27DAP/reference | 1.31187 | 0.301 |
39DAP/reference | 1.13168 | 0.141 |
41DAP/reference | 1.43177 | 0.215 |
42DAP/reference | 1.04372 | 0.889 |
43DAP/reference | 1.22518 | 0.118 |
47DAP/reference | 1.14999 | 0.106 |
52DAP/reference | 0.99265 | 0.621 |
57DAP/reference | 1.06118 | 0.907 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12134 | 0.577 |
17DAP/reference | 1.42634 | 0.043 |
27DAP/reference | 1.0416 | 1 |
39DAP/reference | 0.98391 | 0.509 |
41DAP/reference | 0.93307 | 0.268 |
42DAP/reference | 0.90816 | 0.15 |
43DAP/reference | 1.20196 | 0.308 |
47DAP/reference | 1.04309 | 0.498 |
52DAP/reference | 0.89311 | 0.187 |
57DAP/reference | 1.21493 | 0.104 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13849 | 0.172 |
17DAP/reference | 1.00921 | 1 |
27DAP/reference | 1.09103 | 0.672 |
39DAP/reference | 1.20679 | 0.1 |
41DAP/reference | 1.35036 | 0.031 |
42DAP/reference | 1.14784 | 0.566 |
43DAP/reference | 1.29358 | 0.107 |
47DAP/reference | 1.1346 | 0.093 |
52DAP/reference | 1.38094 | 0.237 |
57DAP/reference | 0.8529 | 0.152 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.91443 | 1 |
26DAP/20DAP | 0.86473 | 1 |
34DAP/26DAP | 0.85537 | 0.771 |
51DAP/34DAP | 1.28525 | 0.1 |
52DAP/51DAP | 0.85924 | 1 |
53DAP/52DAP | 1.60282 | 0.082 |
55DAP/53DAP | 1.31915 | 0.608 |
57DAP/55DAP | 0.90954 | 0.647 |
62DAP/57DAP | 0.43948 | 0.003 |
68DAP/62DAP | 1.58539 | 0.813 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.08683 | 0.015 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.59739 | 0.017 |
Immature Eggplant/Mature Eggplant | 1.20533 | 0.157 |
Ripe Pepper/Ripe Tomato | 0.49012 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.52787 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.11754 | 0.574 |
1-1-2/M82 | 1.06086 | 1 |
12-2/M82 | 1.12067 | 1 |
12-4/M82 | 1.0798 | 1 |
1-3/M82 | 0.78097 | 0.501 |
2-1-1/M82 | 1.04989 | 0.764 |
2-1/M82 | 0.78342 | 0.74 |
2-6/M82 | 1.28517 | 0.329 |
3-2/M82 | 0.33304 | |
4-1-1/M82 | 0.88916 | 1 |
4-1/M82 | 0.81485 | 0.665 |
4-3-2/M82 | 0.87628 | 0.698 |
4-3/M82 | 1.36138 | 0.268 |
5-3/M82 | 0.78556 | 0.642 |
6-2/M82 | 1.04221 | 1 |
6-3/M82 | 1.05306 | 1 |
7-1/M82 | 0.89846 | 1 |
7-2/M82 | 1.25243 | 1 |
9-3-2/M82 | 1.10647 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.52711 | |
IL2-6/WTpooled | 1.29205 | 0.659 |
IL7-5/WTpooled | 1.0235 | |
IL7-3/WTpooled | 0.9867 | 1 |
IL12-4/WTpooled | 0.87958 | 1 |
IL1-4/WTpooled | 0.92195 | 1 |
WT/WTpooled | 0.97641 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.17975 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.85425 | 0.868 |
DC3000/delta hrp 6h | 0.97048 | 0.95 |
DC3000/delta hrp 12h | 0.97499 | 1 |
DC3000/delta hrp 24h | 0.71223 | 0.038 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.11809 | 1 |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04061 | 1 |
Var 0h | 0.939 | 1 |
Var 12h I row2-row1 | 1.14279 | 0.379 |
Var 12h NI row2-row1 | 1.18874 | 0.649 |
Var 36h I row2-row1 | 1.06313 | 0.908 |
Var 36h NI row2-row1 | 1.02519 | 1 |
Var 60h I row2-row1 | 0.73673 | 0.292 |
Var 60h NI row2-row1 | 0.99253 | 1 |
Time course 0hI-0hNI | 1.01518 | 1 |
Time course 12hI-12hNI | 0.98279 | 0.889 |
Time course 36hI-36hNI | 1.14 | 0.019 |
Time course 60hI-60hNI | 2.34507 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03174 | 0.921 |
transgenic ySAMdc/azygous control (breaker) | 1.01372 | 1 |
transgenic ySAMdc/azygous control (red) | 0.96281 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03037 | 0.556 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.11952 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.91908 | 1 |
Manapal/WT (break) | 0.91714 | 1 |
Manapal/WT (red) | 1.11454 | 1 |
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