Expression of 1-1-6.1.8.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.876660.381
27DAP/17DAP0.931930.863
39DAP/27DAP1.568810.249
41DAP/39DAP1.043060.96
42DAP/41DAP0.998731
43DAP/42DAP0.938060.865
47DAP/43DAP0.678580.17
52DAP/47DAP1.185330.982
57DAP/52DAP0.794550.707

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.895420.121
17DAP/reference0.987170.777
27DAP/reference1.019530.966
39DAP/reference1.077360.628
41DAP/reference1.025420.963
42DAP/reference1.051920.523
43DAP/reference1.026570.569
47DAP/reference1.046040.391
52DAP/reference1.000090.598
57DAP/reference0.855320.033

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.029070.782
27DAP/17DAP0.974070.887
39DAP/27DAP1.007091
41DAP/39DAP1.044961
42DAP/41DAP0.982450.721
43DAP/42DAP1.096160.478
47DAP/43DAP0.993890.947
52DAP/47DAP0.860610.624
57DAP/52DAP0.950310.603
57DAP/7DAP0.951041

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.043920.894
17DAP/reference0.928050.295
27DAP/reference1.034890.246
39DAP/reference0.875530.23
41DAP/reference0.984830.489
42DAP/reference0.882580.151
43DAP/reference1.165920.148
47DAP/reference1.13760.161
52DAP/reference1.024141
57DAP/reference1.348180.158

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.912760.164
17DAP/reference0.791740.004
27DAP/reference0.998140.735
39DAP/reference1.014761
41DAP/reference0.953160.364
42DAP/reference0.945160.237
43DAP/reference0.873820.075
47DAP/reference1.112120.138
52DAP/reference0.891890.086
57DAP/reference0.969810.519

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.834280.119
17DAP/reference0.987480.763
27DAP/reference1.433680.834
39DAP/reference0.821260.179
41DAP/reference1.024221
42DAP/reference0.852060.22
43DAP/reference0.905620.071
47DAP/reference0.900070.224
52DAP/reference1.126180.813
57DAP/reference0.901330.199

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.224720.966
26DAP/20DAP1.266160.7
34DAP/26DAP0.993471
51DAP/34DAP0.870780.579
52DAP/51DAP1.138460.638
53DAP/52DAP0.83360.297
55DAP/53DAP0.882240.796
57DAP/55DAP0.887820.587
62DAP/57DAP1.839030.8
68DAP/62DAP0.895310.543
68DAP/14DAP1.122580.594

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.412830.865

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.466970.097
Mature Green Tomato/Ripe Tomato0.542510.031
Immature Eggplant/Mature Eggplant0.604410.068
Ripe Pepper/Ripe Tomato1.020561
Mature Eggplant/Ripe Tomato0.917371

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.608350.69
1-1-2/M821.002411
12-2/M820.77714
12-4/M821.087861
1-3/M822.531560.248
2-1-1/M821.044710.764
2-1/M820.89790.519
2-6/M821.19424
3-2/M821.22530.461
4-1-1/M82N/AN/A
4-1/M820.901741
4-3-2/M821.13213
4-3/M821.138321
5-3/M821.094511
6-2/M822.34540.235
6-3/M821.014991
7-1/M821.615730.598
7-2/M822.0450.302
9-3-2/M821.03927

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.038790.493
IL2-6/WTpooled0.927051
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.079081
IL12-4/WTpooled0.784920.71
IL1-4/WTpooled1.137261
WT/WTpooled0.95231

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.401430.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.001871
DC3000/delta hrp 6h1.072081
DC3000/delta hrp 12h1.095491
DC3000/delta hrp 24h1.002141

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.218940.476
DC3000 delta B/DC3000 delta AB1.41921

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.109481
Exp 36h1.035681
Exp 60h1.039071

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.935071
Var 0h0.94561
Var 12h I row2-row10.882270.338
Var 12h NI row2-row10.791920.713
Var 36h I row2-row11.736960.601
Var 36h NI row2-row11.018531
Var 60h I row2-row10.913630.952
Var 60h NI row2-row11.078081
Time course 0hI-0hNI1.029911
Time course 12hI-12hNI1.000231
Time course 36hI-36hNI0.90830.22
Time course 60hI-60hNI0.716540.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.009641
transgenic ySAMdc/azygous control (breaker)0.658060.131
transgenic ySAMdc/azygous control (red)0.981951

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.183350.089

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.022091

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.098271
Manapal/WT (break)0.862540.333
Manapal/WT (red)1.029791