Expression of 1-1-6.1.8.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.87666 | 0.381 |
27DAP/17DAP | 0.93193 | 0.863 |
39DAP/27DAP | 1.56881 | 0.249 |
41DAP/39DAP | 1.04306 | 0.96 |
42DAP/41DAP | 0.99873 | 1 |
43DAP/42DAP | 0.93806 | 0.865 |
47DAP/43DAP | 0.67858 | 0.17 |
52DAP/47DAP | 1.18533 | 0.982 |
57DAP/52DAP | 0.79455 | 0.707 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89542 | 0.121 |
17DAP/reference | 0.98717 | 0.777 |
27DAP/reference | 1.01953 | 0.966 |
39DAP/reference | 1.07736 | 0.628 |
41DAP/reference | 1.02542 | 0.963 |
42DAP/reference | 1.05192 | 0.523 |
43DAP/reference | 1.02657 | 0.569 |
47DAP/reference | 1.04604 | 0.391 |
52DAP/reference | 1.00009 | 0.598 |
57DAP/reference | 0.85532 | 0.033 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02907 | 0.782 |
27DAP/17DAP | 0.97407 | 0.887 |
39DAP/27DAP | 1.00709 | 1 |
41DAP/39DAP | 1.04496 | 1 |
42DAP/41DAP | 0.98245 | 0.721 |
43DAP/42DAP | 1.09616 | 0.478 |
47DAP/43DAP | 0.99389 | 0.947 |
52DAP/47DAP | 0.86061 | 0.624 |
57DAP/52DAP | 0.95031 | 0.603 |
57DAP/7DAP | 0.95104 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04392 | 0.894 |
17DAP/reference | 0.92805 | 0.295 |
27DAP/reference | 1.03489 | 0.246 |
39DAP/reference | 0.87553 | 0.23 |
41DAP/reference | 0.98483 | 0.489 |
42DAP/reference | 0.88258 | 0.151 |
43DAP/reference | 1.16592 | 0.148 |
47DAP/reference | 1.1376 | 0.161 |
52DAP/reference | 1.02414 | 1 |
57DAP/reference | 1.34818 | 0.158 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91276 | 0.164 |
17DAP/reference | 0.79174 | 0.004 |
27DAP/reference | 0.99814 | 0.735 |
39DAP/reference | 1.01476 | 1 |
41DAP/reference | 0.95316 | 0.364 |
42DAP/reference | 0.94516 | 0.237 |
43DAP/reference | 0.87382 | 0.075 |
47DAP/reference | 1.11212 | 0.138 |
52DAP/reference | 0.89189 | 0.086 |
57DAP/reference | 0.96981 | 0.519 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83428 | 0.119 |
17DAP/reference | 0.98748 | 0.763 |
27DAP/reference | 1.43368 | 0.834 |
39DAP/reference | 0.82126 | 0.179 |
41DAP/reference | 1.02422 | 1 |
42DAP/reference | 0.85206 | 0.22 |
43DAP/reference | 0.90562 | 0.071 |
47DAP/reference | 0.90007 | 0.224 |
52DAP/reference | 1.12618 | 0.813 |
57DAP/reference | 0.90133 | 0.199 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.22472 | 0.966 |
26DAP/20DAP | 1.26616 | 0.7 |
34DAP/26DAP | 0.99347 | 1 |
51DAP/34DAP | 0.87078 | 0.579 |
52DAP/51DAP | 1.13846 | 0.638 |
53DAP/52DAP | 0.8336 | 0.297 |
55DAP/53DAP | 0.88224 | 0.796 |
57DAP/55DAP | 0.88782 | 0.587 |
62DAP/57DAP | 1.83903 | 0.8 |
68DAP/62DAP | 0.89531 | 0.543 |
68DAP/14DAP | 1.12258 | 0.594 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.41283 | 0.865 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.46697 | 0.097 |
Mature Green Tomato/Ripe Tomato | 0.54251 | 0.031 |
Immature Eggplant/Mature Eggplant | 0.60441 | 0.068 |
Ripe Pepper/Ripe Tomato | 1.02056 | 1 |
Mature Eggplant/Ripe Tomato | 0.91737 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.60835 | 0.69 |
1-1-2/M82 | 1.00241 | 1 |
12-2/M82 | 0.77714 | |
12-4/M82 | 1.08786 | 1 |
1-3/M82 | 2.53156 | 0.248 |
2-1-1/M82 | 1.04471 | 0.764 |
2-1/M82 | 0.8979 | 0.519 |
2-6/M82 | 1.19424 | |
3-2/M82 | 1.2253 | 0.461 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.90174 | 1 |
4-3-2/M82 | 1.13213 | |
4-3/M82 | 1.13832 | 1 |
5-3/M82 | 1.09451 | 1 |
6-2/M82 | 2.3454 | 0.235 |
6-3/M82 | 1.01499 | 1 |
7-1/M82 | 1.61573 | 0.598 |
7-2/M82 | 2.045 | 0.302 |
9-3-2/M82 | 1.03927 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.03879 | 0.493 |
IL2-6/WTpooled | 0.92705 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.07908 | 1 |
IL12-4/WTpooled | 0.78492 | 0.71 |
IL1-4/WTpooled | 1.13726 | 1 |
WT/WTpooled | 0.9523 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.40143 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00187 | 1 |
DC3000/delta hrp 6h | 1.07208 | 1 |
DC3000/delta hrp 12h | 1.09549 | 1 |
DC3000/delta hrp 24h | 1.00214 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.21894 | 0.476 |
DC3000 delta B/DC3000 delta AB | 1.41921 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.10948 | 1 |
Exp 36h | 1.03568 | 1 |
Exp 60h | 1.03907 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.93507 | 1 |
Var 0h | 0.9456 | 1 |
Var 12h I row2-row1 | 0.88227 | 0.338 |
Var 12h NI row2-row1 | 0.79192 | 0.713 |
Var 36h I row2-row1 | 1.73696 | 0.601 |
Var 36h NI row2-row1 | 1.01853 | 1 |
Var 60h I row2-row1 | 0.91363 | 0.952 |
Var 60h NI row2-row1 | 1.07808 | 1 |
Time course 0hI-0hNI | 1.02991 | 1 |
Time course 12hI-12hNI | 1.00023 | 1 |
Time course 36hI-36hNI | 0.9083 | 0.22 |
Time course 60hI-60hNI | 0.71654 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.00964 | 1 |
transgenic ySAMdc/azygous control (breaker) | 0.65806 | 0.131 |
transgenic ySAMdc/azygous control (red) | 0.98195 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.18335 | 0.089 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.02209 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.09827 | 1 |
Manapal/WT (break) | 0.86254 | 0.333 |
Manapal/WT (red) | 1.02979 | 1 |
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