Tomato Functional Genomics Database (TFGD)

Expression of 1-1-6.1.8.6

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.94039	0.652
27DAP/17DAP	1.02392	1
39DAP/27DAP	0.80975	0.298
41DAP/39DAP	1.22997	0.498
42DAP/41DAP	1.11484	0.871
43DAP/42DAP	1.03191	1
47DAP/43DAP	1.0707	0.926
52DAP/47DAP	0.85383	0.609
57DAP/52DAP	0.87523	0.85

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.01794	0.872
17DAP/reference	1.06028	0.077
27DAP/reference	1.01634	0.863
39DAP/reference	0.98745	0.816
41DAP/reference	1.07822	0.312
42DAP/reference	0.97285	0.129
43DAP/reference	0.96435	0.464
47DAP/reference	0.96442	0.224
52DAP/reference	0.92581	0.275
57DAP/reference	0.97087	0.503

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.0405	0.536
27DAP/17DAP	1.02853	0.909
39DAP/27DAP	1.02308	0.663
41DAP/39DAP	1.01465	0.88
42DAP/41DAP	0.99925	0.934
43DAP/42DAP	1.04481	0.134
47DAP/43DAP	0.99409	0.983
52DAP/47DAP	1.00578	0.991
57DAP/52DAP	0.98261	0.721
57DAP/7DAP	0.9749	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.01279	0.927
17DAP/reference	0.96308	0.167
27DAP/reference	0.9195	0.011
39DAP/reference	1.00161	1
41DAP/reference	0.94106	0.044
42DAP/reference	1.00413	1
43DAP/reference	0.93165	0.151
47DAP/reference	0.94583	0.293
52DAP/reference	0.94346	0.179
57DAP/reference	0.95524	0.05

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.02049	0.794
17DAP/reference	0.95321	0.253
27DAP/reference	0.91577	0.15
39DAP/reference	0.88384	0.117
41DAP/reference	0.89831	0.098
42DAP/reference	0.96881	0.433
43DAP/reference	0.93944	0.206
47DAP/reference	1.04205	0.441
52DAP/reference	0.9451	0.072
57DAP/reference	0.9897	0.68

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.99005	0.455
17DAP/reference	1.01599	0.854
27DAP/reference	0.96315	0.23
39DAP/reference	0.95051	0.083
41DAP/reference	0.94265	0.031
42DAP/reference	0.92178	0.134
43DAP/reference	0.9069	0.071
47DAP/reference	0.96338	0.409
52DAP/reference	1.09029	0.509
57DAP/reference	0.83884	0.08

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.96263	1
26DAP/20DAP	0.99357	1
34DAP/26DAP	1.0164	1
51DAP/34DAP	0.91237	0.579
52DAP/51DAP	1.00233	0.965
53DAP/52DAP	0.96793	0.909
55DAP/53DAP	0.93488	0.775
57DAP/55DAP	1.08733	0.682
62DAP/57DAP	0.98655	0.994
68DAP/62DAP	1.10813	0.813
68DAP/14DAP	0.81214	0.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.98266	0.635

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	1.21641	0.417
Mature Green Tomato/Ripe Tomato	1.15244	0.363
Immature Eggplant/Mature Eggplant	1.09167	0.311
Ripe Pepper/Ripe Tomato	0.81941	0.224
Mature Eggplant/Ripe Tomato	1.11435	1

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	1.07267	0.877
1-1-2/M82	1.00946	1
12-2/M82	1.03064	1
12-4/M82	1.09031	1
1-3/M82	0.96026	0.501
2-1-1/M82	1.06245	1
2-1/M82	0.95778	1
2-6/M82	0.95522	0.501
3-2/M82	0.87739	1
4-1-1/M82	1.04851	0.977
4-1/M82	1.09583	0.512
4-3-2/M82	0.98191	1
4-3/M82	0.98878	1
5-3/M82	1.04357	1
6-2/M82	1.03959	1
6-3/M82	1.02271	1
7-1/M82	0.99966	1
7-2/M82	1.07472	0.385
9-3-2/M82	0.97951	1

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.84199	0.243
IL2-6/WTpooled	1.05148	0.659
IL7-5/WTpooled	0.89769	1
IL7-3/WTpooled	1.10656	1
IL12-4/WTpooled	0.80526	0.581
IL1-4/WTpooled	0.92265	0.699
WT/WTpooled	0.97745	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	0.99258	1

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.99443	1
DC3000/delta hrp 6h	0.95213	0.95
DC3000/delta hrp 12h	0.95223	1
DC3000/delta hrp 24h	0.96485	0.736

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	1.02878	0.313
DC3000 delta B/DC3000 delta AB	1.01417	0.694

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	0.86486	1
Exp 36h	1.09357	0.693
Exp 60h	1.17601	0.227

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.0211	1
Var 0h	0.97781	1
Var 12h I row2-row1	1.0946	0.224
Var 12h NI row2-row1	0.84549	0.627
Var 36h I row2-row1	0.94861	0.805
Var 36h NI row2-row1	0.91323	0.522
Var 60h I row2-row1	1.223	0.562
Var 60h NI row2-row1	1.07468	0.904
Time course 0hI-0hNI	1.06126	0.662
Time course 12hI-12hNI	1.01861	0.788
Time course 36hI-36hNI	1.03426	0.28
Time course 60hI-60hNI	1.11858	0.017

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.1157	0.277
transgenic ySAMdc/azygous control (breaker)	1.08209	0.178
transgenic ySAMdc/azygous control (red)	0.9645	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.03774	0.334

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.98477	0.789

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.90163	0.172
Manapal/WT (break)	0.92852	1
Manapal/WT (red)	0.87891	0.183