Expression of 1-1-6.1.9.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11236 | 0.697 |
27DAP/17DAP | 1.05526 | 0.88 |
39DAP/27DAP | 0.90563 | 0.594 |
41DAP/39DAP | 1.06302 | 0.914 |
42DAP/41DAP | 1.05898 | 1 |
43DAP/42DAP | 0.98005 | 0.925 |
47DAP/43DAP | 1.20952 | 0.576 |
52DAP/47DAP | 0.82905 | 0.551 |
57DAP/52DAP | 1.02174 | 0.993 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92321 | 0.238 |
17DAP/reference | 0.97326 | 0.567 |
27DAP/reference | 0.98052 | 0.654 |
39DAP/reference | 1.00625 | 0.786 |
41DAP/reference | 1.04129 | 0.516 |
42DAP/reference | 0.92744 | 0.034 |
43DAP/reference | 0.98029 | 0.691 |
47DAP/reference | 0.99275 | 0.568 |
52DAP/reference | 0.89407 | 0.167 |
57DAP/reference | 1.03611 | 0.366 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00198 | 1 |
27DAP/17DAP | 1.00758 | 0.976 |
39DAP/27DAP | 0.96788 | 0.668 |
41DAP/39DAP | 0.93348 | 0.713 |
42DAP/41DAP | 1.01763 | 0.916 |
43DAP/42DAP | 0.99594 | 0.991 |
47DAP/43DAP | 1.00615 | 0.95 |
52DAP/47DAP | 0.97206 | 0.907 |
57DAP/52DAP | 0.99992 | 0.926 |
57DAP/7DAP | 0.95531 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89369 | 0.074 |
17DAP/reference | 0.91703 | 0.028 |
27DAP/reference | 0.90415 | 0.011 |
39DAP/reference | 0.90436 | 0.011 |
41DAP/reference | 0.87156 | 0.037 |
42DAP/reference | 0.91337 | 0.2 |
43DAP/reference | 0.89206 | 0.086 |
47DAP/reference | 0.88643 | 0.079 |
52DAP/reference | 0.83538 | 0.053 |
57DAP/reference | 0.84048 | 0.022 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88781 | 0.119 |
17DAP/reference | 0.92475 | 0.092 |
27DAP/reference | 0.83274 | 0.056 |
39DAP/reference | 0.88223 | 0.081 |
41DAP/reference | 0.85198 | 0.013 |
42DAP/reference | 0.86766 | 0.05 |
43DAP/reference | 0.92586 | 0.243 |
47DAP/reference | 0.95418 | 0.048 |
52DAP/reference | 0.95549 | 0.22 |
57DAP/reference | 0.96916 | 0.488 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90518 | 0.043 |
17DAP/reference | 0.96882 | 0.571 |
27DAP/reference | 0.95811 | 0.092 |
39DAP/reference | 0.93636 | 0.035 |
41DAP/reference | 0.89036 | 0.043 |
42DAP/reference | 0.90898 | 0.108 |
43DAP/reference | 0.90895 | 0.066 |
47DAP/reference | 0.95409 | 0.434 |
52DAP/reference | 0.90243 | 0.268 |
57DAP/reference | 0.88213 | 0.069 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04147 | 0.966 |
26DAP/20DAP | 1.05487 | 0.839 |
34DAP/26DAP | 1.01229 | 1 |
51DAP/34DAP | 1.04332 | 0.654 |
52DAP/51DAP | 0.99189 | 1 |
53DAP/52DAP | 1.08061 | 0.37 |
55DAP/53DAP | 1.09826 | 0.622 |
57DAP/55DAP | 0.95922 | 0.821 |
62DAP/57DAP | 1.00716 | 1 |
68DAP/62DAP | 1.01265 | 1 |
68DAP/14DAP | 1.27834 | 0.384 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.93468 | 0.198 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.25842 | 0.287 |
Mature Green Tomato/Ripe Tomato | 0.858 | |
Immature Eggplant/Mature Eggplant | 1.11236 | 0.417 |
Ripe Pepper/Ripe Tomato | 1.01767 | |
Mature Eggplant/Ripe Tomato | 1.2317 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05119 | 0.877 |
1-1-2/M82 | 1.00965 | 1 |
12-2/M82 | 0.92662 | 0.955 |
12-4/M82 | 0.99542 | 1 |
1-3/M82 | 0.98207 | 0.501 |
2-1-1/M82 | 0.91561 | 0.92 |
2-1/M82 | 0.96909 | 1 |
2-6/M82 | 0.99597 | 1 |
3-2/M82 | 1.05019 | |
4-1-1/M82 | 1.06098 | 1 |
4-1/M82 | 0.96354 | |
4-3-2/M82 | 0.91274 | |
4-3/M82 | 0.9151 | 0.72 |
5-3/M82 | 0.96333 | 1 |
6-2/M82 | 0.98895 | 1 |
6-3/M82 | 1.04758 | 1 |
7-1/M82 | 1.05471 | 0.741 |
7-2/M82 | 0.96447 | 0.881 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.83838 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.7226 | |
IL7-3/WTpooled | 0.72072 | |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.05127 | |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.96418 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97912 | 1 |
DC3000/delta hrp 6h | 1.11849 | 0.95 |
DC3000/delta hrp 12h | 0.95846 | 1 |
DC3000/delta hrp 24h | 1.01812 | 0.797 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.98616 | 1 |
DC3000 delta B/DC3000 delta AB | 0.8976 | 0.117 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.73572 | 0.371 |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98504 | 1 |
Var 0h | 0.85918 | 0.457 |
Var 12h I row2-row1 | 1.04581 | 0.544 |
Var 12h NI row2-row1 | 1.02561 | 1 |
Var 36h I row2-row1 | 0.9305 | 1 |
Var 36h NI row2-row1 | 0.93469 | 0.61 |
Var 60h I row2-row1 | 1.1738 | 0.562 |
Var 60h NI row2-row1 | 1.05942 | 1 |
Time course 0hI-0hNI | 1.03459 | 1 |
Time course 12hI-12hNI | 1.0462 | 0.756 |
Time course 36hI-36hNI | 1.0239 | 0.799 |
Time course 60hI-60hNI | 1.03427 | 0.495 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94663 | 0.529 |
transgenic ySAMdc/azygous control (breaker) | 1.41943 | 0.172 |
transgenic ySAMdc/azygous control (red) | 1.08715 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9769 | 0.227 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.03791 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.74677 | 0.172 |
Manapal/WT (break) | 0.76463 | 1 |
Manapal/WT (red) | 0.89843 | 0.216 |
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