Expression of 1-1-6.1.9.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.112360.697
27DAP/17DAP1.055260.88
39DAP/27DAP0.905630.594
41DAP/39DAP1.063020.914
42DAP/41DAP1.058981
43DAP/42DAP0.980050.925
47DAP/43DAP1.209520.576
52DAP/47DAP0.829050.551
57DAP/52DAP1.021740.993

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.923210.238
17DAP/reference0.973260.567
27DAP/reference0.980520.654
39DAP/reference1.006250.786
41DAP/reference1.041290.516
42DAP/reference0.927440.034
43DAP/reference0.980290.691
47DAP/reference0.992750.568
52DAP/reference0.894070.167
57DAP/reference1.036110.366

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.001981
27DAP/17DAP1.007580.976
39DAP/27DAP0.967880.668
41DAP/39DAP0.933480.713
42DAP/41DAP1.017630.916
43DAP/42DAP0.995940.991
47DAP/43DAP1.006150.95
52DAP/47DAP0.972060.907
57DAP/52DAP0.999920.926
57DAP/7DAP0.955311

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.893690.074
17DAP/reference0.917030.028
27DAP/reference0.904150.011
39DAP/reference0.904360.011
41DAP/reference0.871560.037
42DAP/reference0.913370.2
43DAP/reference0.892060.086
47DAP/reference0.886430.079
52DAP/reference0.835380.053
57DAP/reference0.840480.022

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.887810.119
17DAP/reference0.924750.092
27DAP/reference0.832740.056
39DAP/reference0.882230.081
41DAP/reference0.851980.013
42DAP/reference0.867660.05
43DAP/reference0.925860.243
47DAP/reference0.954180.048
52DAP/reference0.955490.22
57DAP/reference0.969160.488

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.905180.043
17DAP/reference0.968820.571
27DAP/reference0.958110.092
39DAP/reference0.936360.035
41DAP/reference0.890360.043
42DAP/reference0.908980.108
43DAP/reference0.908950.066
47DAP/reference0.954090.434
52DAP/reference0.902430.268
57DAP/reference0.882130.069

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.041470.966
26DAP/20DAP1.054870.839
34DAP/26DAP1.012291
51DAP/34DAP1.043320.654
52DAP/51DAP0.991891
53DAP/52DAP1.080610.37
55DAP/53DAP1.098260.622
57DAP/55DAP0.959220.821
62DAP/57DAP1.007161
68DAP/62DAP1.012651
68DAP/14DAP1.278340.384

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.934680.198

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.258420.287
Mature Green Tomato/Ripe Tomato0.858
Immature Eggplant/Mature Eggplant1.112360.417
Ripe Pepper/Ripe Tomato1.01767
Mature Eggplant/Ripe Tomato1.23171

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.051190.877
1-1-2/M821.009651
12-2/M820.926620.955
12-4/M820.995421
1-3/M820.982070.501
2-1-1/M820.915610.92
2-1/M820.969091
2-6/M820.995971
3-2/M821.05019
4-1-1/M821.060981
4-1/M820.96354
4-3-2/M820.91274
4-3/M820.91510.72
5-3/M820.963331
6-2/M820.988951
6-3/M821.047581
7-1/M821.054710.741
7-2/M820.964470.881
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.83838
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.7226
IL7-3/WTpooled0.72072
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.05127
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.964181

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.979121
DC3000/delta hrp 6h1.118490.95
DC3000/delta hrp 12h0.958461
DC3000/delta hrp 24h1.018120.797

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.986161
DC3000 delta B/DC3000 delta AB0.89760.117

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.735720.371
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.985041
Var 0h0.859180.457
Var 12h I row2-row11.045810.544
Var 12h NI row2-row11.025611
Var 36h I row2-row10.93051
Var 36h NI row2-row10.934690.61
Var 60h I row2-row11.17380.562
Var 60h NI row2-row11.059421
Time course 0hI-0hNI1.034591
Time course 12hI-12hNI1.04620.756
Time course 36hI-36hNI1.02390.799
Time course 60hI-60hNI1.034270.495

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.946630.529
transgenic ySAMdc/azygous control (breaker)1.419430.172
transgenic ySAMdc/azygous control (red)1.087150.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.97690.227

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.037911

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.746770.172
Manapal/WT (break)0.764631
Manapal/WT (red)0.898430.216