Expression of 1-1-6.1.9.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.754650.036
27DAP/17DAP0.761990.256
39DAP/27DAP1.767230.095
41DAP/39DAP0.637580.062
42DAP/41DAP1.143910.751
43DAP/42DAP1.028161
47DAP/43DAP1.202710.659
52DAP/47DAP0.835640.587
57DAP/52DAP1.1670.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.750120.009
17DAP/reference0.939250.474
27DAP/reference0.810980.052
39DAP/reference0.99430.797
41DAP/reference0.936440.542
42DAP/reference1.521660.001
43DAP/reference1.24320.01
47DAP/reference1.263380.003
52DAP/reference1.053011
57DAP/reference1.216380.03

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.891650.26
27DAP/17DAP0.983580.919
39DAP/27DAP1.009721
41DAP/39DAP1.28050.774
42DAP/41DAP0.97470.746
43DAP/42DAP0.961080.538
47DAP/43DAP1.05130.805
52DAP/47DAP0.810810.217
57DAP/52DAP0.86560.384
57DAP/7DAP0.768891

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.244160.024
17DAP/reference1.565970.006
27DAP/reference1.750060.006
39DAP/reference1.392980.006
41DAP/reference1.413940.011
42DAP/reference1.673570.024
43DAP/reference1.591260.006
47DAP/reference1.700780.014
52DAP/reference2.423290.007
57DAP/reference2.111850.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.496390.059
17DAP/reference1.647220.007
27DAP/reference1.87330.018
39DAP/reference1.443930.013
41DAP/reference1.722690.007
42DAP/reference1.598370.009
43DAP/reference1.125660.929
47DAP/reference1.630920.008
52DAP/reference1.002940.761
57DAP/reference1.222170.508

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.029950.015
17DAP/reference1.335990.13
27DAP/reference1.24490.036
39DAP/reference1.65620.006
41DAP/reference1.416440.007
42DAP/reference1.849140.007
43DAP/reference1.718390.013
47DAP/reference1.184230.155
52DAP/reference1.703950.031
57DAP/reference1.641730.008

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.730170.151
26DAP/20DAP1.887420.099
34DAP/26DAP1.034151
51DAP/34DAP0.650760.061
52DAP/51DAP0.95041
53DAP/52DAP0.829480.226
55DAP/53DAP0.628230.027
57DAP/55DAP1.770440.242
62DAP/57DAP1.067060.8
68DAP/62DAP0.940960.747
68DAP/14DAP1.055341

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.294070.122

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.914410.491
Mature Green Tomato/Ripe Tomato1.172920.523
Immature Eggplant/Mature Eggplant1.176210.063
Ripe Pepper/Ripe Tomato1.250220.258
Mature Eggplant/Ripe Tomato0.726630.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.886570.944
1-1-2/M821.255821
12-2/M821.09043
12-4/M821.063631
1-3/M821.860870.479
2-1-1/M820.873550.465
2-1/M820.731410.519
2-6/M820.986791
3-2/M820.830880.414
4-1-1/M820.89386
4-1/M821.242331
4-3-2/M821.365890.262
4-3/M821.287850.268
5-3/M821.361290.572
6-2/M820.99906
6-3/M820.920411
7-1/M820.940440.803
7-2/M821.182491
9-3-2/M821.296681

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.532030.243
IL2-6/WTpooled0.927871
IL7-5/WTpooled0.944221
IL7-3/WTpooled0.891780.418
IL12-4/WTpooled1.052130.557
IL1-4/WTpooled0.879970.834
WT/WTpooled0.987951

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.164120.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.134570.875
DC3000/delta hrp 6h0.960790.95
DC3000/delta hrp 12h1.0041
DC3000/delta hrp 24h1.134380.604

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.980621
DC3000 delta B/DC3000 delta AB0.977660.693

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.046881
Exp 36h1.138361
Exp 60h1.354550.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.987151
Var 0h1.087030.936
Var 12h I row2-row10.902070.39
Var 12h NI row2-row11.097511
Var 36h I row2-row11.044180.908
Var 36h NI row2-row10.83390.347
Var 60h I row2-row11.007861
Var 60h NI row2-row10.773290.292
Time course 0hI-0hNI0.91240.325
Time course 12hI-12hNI1.08880.517
Time course 36hI-36hNI1.363420.056
Time course 60hI-60hNI1.13140.495

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.959880.567
transgenic ySAMdc/azygous control (breaker)1.791280.166
transgenic ySAMdc/azygous control (red)1.202030.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.204660.105

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.848450.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.983251
Manapal/WT (break)1.115330.14
Manapal/WT (red)2.304970.164